Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1184 ATGGCGTCTTCGTATCCGGGTTCCGTTAGTGCCGCGCAGGTTGGTTCCTACTTCGTGGGACAGTACTATCAGGTTCTTCGCCAGCAACCCGATCTCGTTTACCGGTTCTACGCCGAGGACAGCAGCATGATTCGCGGTGATGAGGATTCCGTCGAAACCGCGCACAATCTGATGGAAATTCATTCAATTCTCTCGTCACTGAGTTTTACTACGATTGAGATCAAGACGATCAATTCTCTTGACTCTTTGGGTGGAAGTGTGCTTGTGATGGTCTCAGGTTTTGTGAAGATAAAGGATATCAGTGGGAGGCGGAAGTTTGTTCAAACCTTCCTTCTTGCTCCTCAGGAAAAGGGCTTCTTTGTATTGAATGATATGTTTCATTTCATTGACGATGGAGTAACGTACCCAAATCTGGTACCAGTGGCATCCGAAACGTTTGACACACAACCGCATGTATCTGCTTCTCTTGCAGAGCGCCCAGCTTCAGACTACGGTTTGGAGGAAGAAGCTAGGGAATATGTCAACTCAGTTCATATAGATGATGATCCAGTGGACAAGTATAGTCTTCCTGAGCACCAGCAGCAGCTACAAGAAGATcttgaaaatgaaattgtggTGGAGGAAACTCCTGCACAGGAGGCATCTCCACCAATTCATAGCGTTGCACACACTGTCCAAGAGCCCCCTGTTGCTCTTGTGGAAGAATCTTTAGAGGAGCCTCCTAAGAAAACTTATGCATCTATTTTACGAGTCTCCAAAGGGCAGCCAGTGTTGTCAGCTGCTCCACaacattcttttaaaagtgCTCCTCCTCCTTCAGAGTTGAACCATGTCGCACAGCCTGCTGTTCAGCAGTCAAGCTCTGCATCTATGTATGTTCCCGAGTTGGGGGCTGAGGCAGCAGAGGAAGGCTATGGCCTAGAAGACGAAGGTGAAGTAACATCCGTCTATGTGAGAAACTTGCCTGCTAATGTTACTGAAGCTGAGATTGACCAGGAATTTAAGAATTTTGGCAGAATTAAGCTGGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTTTGCTATGCATTTGTGGAATTTGAAGACATTATTGGTGTTCAAAATGCGCTTCAGGCTTCTCCCATACAATTGGCTGGAAGACAAGTGTACATAGAGGAGCGAAGGCCAAACAGTGGCAGTGCGGCTCGGGGAGGAAGTAATGAAGGGGAAGAGGCAGAGGTGGTTATCAAACAGATGCTCCGAGAGGGCGTTTTGGTGCCAGAAGCATGGGAAGGGGAATTAACCAGGATAGTTCAGACTATACCAGACAAAGAGGTGATGGATATCTTCAGCGTGGTTCACGATGAGGAAAATGTGGCAAAAGCATATGCACTGAGATGCCATTCAAGGACTTATACAGTTAGTGAAATTTGTGCTTGA 1425 0.4582 MASSYPGSVSAAQVGSYFVGQYYQVLRQQPDLVYRFYAEDSSMIRGDEDSVETAHNLMEIHSILSSLSFTTIEIKTINSLDSLGGSVLVMVSGFVKIKDISGRRKFVQTFLLAPQEKGFFVLNDMFHFIDDGVTYPNLVPVASETFDTQPHVSASLAERPASDYGLEEEAREYVNSVHIDDDPVDKYSLPEHQQQLQEDLENEIVVEETPAQEASPPIHSVAHTVQEPPVALVEESLEEPPKKTYASILRVSKGQPVLSAAPQHSFKSAPPPSELNHVAQPAVQQSSSASMYVPELGAEAAEEGYGLEDEGEVTSVYVRNLPANVTEAEIDQEFKNFGRIKLDGIFIRVRKEIGVCYAFVEFEDIIGVQNALQASPIQLAGRQVYIEERRPNSGSAARGGSNEGEEAEVVIKQMLREGVLVPEAWEGELTRIVQTIPDKEVMDIFSVVHDEENVAKAYALRCHSRTYTVSEICA 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1184 474 Gene3D - 299 411 IPR012677 -
Ssu4g1184 474 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 9 401 IPR039539 -
Ssu4g1184 474 SUPERFAMILY NTF2-like 10 129 IPR032710 -
Ssu4g1184 474 PANTHER GB|AAD20086.1 9 401 - -
Ssu4g1184 474 SUPERFAMILY RNA-binding domain, RBD 311 401 IPR035979 GO:0003676
Ssu4g1184 474 CDD RRM_SF 316 387 - -
Ssu4g1184 474 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Ssu4g1184 474 SMART rrm1_1 315 387 IPR000504 GO:0003723
Ssu4g1184 474 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Ssu4g1184 474 Gene3D - 5 132 - -
Ssu4g1184 474 CDD NTF2 10 130 IPR018222 -
Ssu4g1184 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 379 IPR000504 GO:0003723
Ssu4g1184 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 391 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1184 Ssu-Chr4 18870584 18877828 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1184 - - gmx:100787900 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1184 4 18870584 18877828 Ssu4g1184 4 18870584 18877828 ECH