Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1182 ATGCTGTTGAGAAGCTCTTCAACACCAGTTCTTGGCTCCCTCCTCCCTTCCTTCACAGATAgtcctaataataatattcactCAGAAACCTGCCATGCACTTAAACATTTTCCACCAACCAGTGTCCCACAACATTATCACAGACTGTCTTTCCATCAAACTGGGTGTTTCACCCTCCCTTCCTTCTCATGTGGTTCTTCTCCAATCTCTCCCTCAATTGGTGACCTTGAACGGCAAAACAAAGGCGGCTTTAGAAGAGTTCAATCTGATGGGAACTTGCAAGACTTAGTCTACTCTTCttgcagcaacaacaacaacaatgaagaCAGGTTGGAGTATTCAGACCCTCCCACCAAGAGGTTTTCAGCTAGACACAGATGCTTGGTGCTGGAGACCATTCCTTCATTCTATACTGGTAATCACGAGGGCTTGCGTGAGGAAGATGAAGAAATGGAAAGTGAGAGTGAAGATGGGGAAGAGAGAGGAGAGTTGgagggagagaagagaggagATGGGTTCAGTGTGGTGAATGATGGGAAGGGTGTGATATTGAGTGAAGAAGCGACAGTGAAGGATGGAGTTTGTAGGGTGAGTTTTGGTGACAAGGAAGAGGGTGGTAGTGGTAAAGAAATGTATCTTGCAAAGGGGCTTGGGGTAGAGTGCTGTGGTGATGGGGTAGGTGGCTGCAGAGGTAGTGGTGGAACTGGTGATCATAATCCCAAGGGTTTTGGAGGGAATGATGGAGATGGGCATGGGGTGGAAGAGTATTACAAGAAGATGGTGAAGGAAAATCCTGGGAATTCGTTGTTTCTGAGGAATTATGCTAATTTTCTGTATCAGTGCAAACAGGACCGTGAAGGAGCAGAGGAGTATTATTCCCGTGCCATACTAGCGGACccaaatgatggagaagtcCTATCACAGTATGGGAAGCTAGTATGGGAGCTACATCATGACCAAGAACGTGCCACCAGCTATTTTGAAAGAGCGGTGCAAGCCTCTCCTGAAGACAGCCATGTACATGCCGCATATGCTAGTTTCCTTTGGGACACGGAGGAAGACGAGGATGGTAGCAATGAACCACAATGTTTACCGCCTCATTCTCATCAGGGAGCTACTATGGCTACTGCAGGTGCTGGAATATGA 1146 0.4398 MLLRSSSTPVLGSLLPSFTDSPNNNIHSETCHALKHFPPTSVPQHYHRLSFHQTGCFTLPSFSCGSSPISPSIGDLERQNKGGFRRVQSDGNLQDLVYSSCSNNNNNEDRLEYSDPPTKRFSARHRCLVLETIPSFYTGNHEGLREEDEEMESESEDGEERGELEGEKRGDGFSVVNDGKGVILSEEATVKDGVCRVSFGDKEEGGSGKEMYLAKGLGVECCGDGVGGCRGSGGTGDHNPKGFGGNDGDGHGVEEYYKKMVKENPGNSLFLRNYANFLYQCKQDREGAEEYYSRAILADPNDGEVLSQYGKLVWELHHDQERATSYFERAVQASPEDSHVHAAYASFLWDTEEDEDGSNEPQCLPPHSHQGATMATAGAGI 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1182 381 MobiDBLite consensus disorder prediction 147 161 - -
Ssu4g1182 381 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 364 - -
Ssu4g1182 381 PANTHER OSJNBA0004N05.2 PROTEIN 1 364 - -
Ssu4g1182 381 MobiDBLite consensus disorder prediction 139 173 - -
Ssu4g1182 381 SMART hat_new_1 283 315 IPR003107 GO:0006396
Ssu4g1182 381 SMART hat_new_1 248 280 IPR003107 GO:0006396
Ssu4g1182 381 SMART hat_new_1 318 350 IPR003107 GO:0006396
Ssu4g1182 381 SUPERFAMILY TPR-like 254 356 IPR011990 GO:0005515
Ssu4g1182 381 MobiDBLite consensus disorder prediction 351 381 - -
Ssu4g1182 381 Gene3D Tetratricopeptide repeat domain 246 358 IPR011990 GO:0005515
Ssu4g1182 381 Coils Coil 141 161 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1182 - - gmx:100788436 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1182 4 18865723 18867318 Ssu4g1182 4 18865723 18867318 ECH