Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1170 ATGCTCTTGTTCTTCAATCTCGTTCATTGGCTAGAGGTGTTGGTGACAGAGGAGGTAGGTGTCGTCGTAGAACTAACACTATTCATTGGTGGCAAGGTGTTGCCAGAGATTAGGGGTGACTATAGTGTTTCCAGGACCCATATGTCTGTCGCCTGGGCAATACGTTATGATTCAATATTTGTCATTGGCTCGTGGAAACCAGAGGGAAAGGAACTGGATCCTTTCCATTCCACCACACAAAAACATCAGCAAAACAAACTGAGAAAGTTTTTGTTTCTGGGAAACAGTTACTGGGTTTTAGCAGGGGTTGCATTAagAGGTGTCCTTGATGGAAATGCGCTGATGgatggcttcttcttctttcttggatTGGATGATATCAGAGTTGGAATTGATCTTCCTACTATAGAGGTTCGGTTTGAGAACTTGAACATCGAAGCAGAAGCTCGTGTAGGAACTAGAGCTTTGCCTACCTTCACTAACTTCACGGTTAATATAGTGGAGgGCTTGTTGAACTCTCTTCATGTACTTCCAAGTAGAAAACAACATATAAACATTCTCCAGGATGTTAGTGGAATAATAAAGCCTGGCAGGCCCTCCAAGTTCTGGGAAAACCACACTCCTGTTGGCCTTGGCTGGAAAACTGGATCCAAAATTAAAGACTTGCTGGCAGAATTgtcaagaagagaaaaagaggcAAATATCAAGCCTGATCCAGATATCGATGCCTACATGAAGGCTATTGCATCTGAAGGCCAGAAGGCAAATTTGATAACAGATTATGTCCTAAggATTTTGGGACTAGAGGTTTGTGCTGATACCGTTGTAGGAAATGCTATGTTAAGAGGTATCTCTGGTGGACAAAGGAAACGTGTTACAACAGCAGTTGGGAGGGAAATGACAGTGGCTCTAACACTTGGGTCATTTACACTGGCCATCCTTTTTGCTATGAGTGGTTTTGTCCTATCAAAAGacaatataaaaaaatggtgGCTATGGGGCTTCTGGATATCACCTATGATGTATGGACAGAATGGAATGGTAAATAATGAGTTCCTTGGGAAGAGATGGAGACATGTTCTACCTAACTCAACCGAGCCGCTTGGAGTTGAAGTTTTGAAATCCCGGGGATTCTTCACTCAGTCATACTGGTACTGGATAGGTGTTGGGGCTTTGGTTGGTTATACATTACTTTTCAACTTTGGCTACATCTTTGCTCTCACATACTTGAATCCACTCGGGAAACATCAAGCTGTTATATCAGAGGAACCTCAAAGCAATGAGCAGAGTGGTGGTAGTAAAAAAGGAACTAATATGTTGAAGaacataaaatatagtttttctcAGCACTCAAAAAGAGTGAGAAATGGCGAAAGTATAAGTGGAAGCACCTCTCCCCCTACTTTATCAACTAGTCATGAAGCAGCTGCTGAAGTGGCAAATCATAACAAGAAAAGAGGAATGGTTCTTCCTTTTGAACCACATTCCATCACCTTTGATGATGTAAAATATTCTGTCGACATGCCAGTGGTTCTAATTGAGCTCCCATATGTTCTAGTACAAGCTGTGGTATATGGCATTATAATTTATGCCATGATTGGTTTTGAGTGGACTGTCACTAAAGTTTTCTGGTACCTATTCTTCATGTACTTCACCTTCCTGACCTTCACCTACTATGGCATGATGTCAGTGGCAGTGACCCCCAACCAACACATTTCTTCTATAGTTTCCTCTGCATTTTATGCAGTGTGGAATCTCTTCTCCGGATTCATAGTCCCACGACCAaGGATCCCAGTGTGGTGGAGATGGTACAGTTGGGCAAATCCAGTAGCTTGGAGTTTGTATGGATTGGTGGCTTCACAATATGGAGACATACAGCGAAGCATTGAAACCAGTGACGGAAGAACAACAGTGGAAGGCTTTGTAAGAAGCTACTTTGGTTTCAGGCATGATTTTCTGGGAGTGGTTGCAGCTGTGATTGTTGCATTCCCAGTAGTCTTTGCATTGGTCTTTGCCATATCAGTGAAGATGTTTAATTTCCAACGGCGTTAA 2052 0.4084 MLLFFNLVHWLEVLVTEEVGVVVELTLFIGGKVLPEIRGDYSVSRTHMSVAWAIRYDSIFVIGSWKPEGKELDPFHSTTQKHQQNKLRKFLFLGNSYWVLAGVALRGVLDGNALMDGFFFFLGLDDIRVGIDLPTIEVRFENLNIEAEARVGTRALPTFTNFTVNIVEGLLNSLHVLPSRKQHINILQDVSGIIKPGRPSKFWENHTPVGLGWKTGSKIKDLLAELSRREKEANIKPDPDIDAYMKAIASEGQKANLITDYVLRILGLEVCADTVVGNAMLRGISGGQRKRVTTAVGREMTVALTLGSFTLAILFAMSGFVLSKDNIKKWWLWGFWISPMMYGQNGMVNNEFLGKRWRHVLPNSTEPLGVEVLKSRGFFTQSYWYWIGVGALVGYTLLFNFGYIFALTYLNPLGKHQAVISEEPQSNEQSGGSKKGTNMLKNIKYSFSQHSKRVRNGESISGSTSPPTLSTSHEAAAEVANHNKKRGMVLPFEPHSITFDDVKYSVDMPVVLIELPYVLVQAVVYGIIIYAMIGFEWTVTKVFWYLFFMYFTFLTFTYYGMMSVAVTPNQHISSIVSSAFYAVWNLFSGFIVPRPRIPVWWRWYSWANPVAWSLYGLVASQYGDIQRSIETSDGRTTVEGFVRSYFGFRHDFLGVVAAVIVAFPVVFALVFAISVKMFNFQRR 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1170 683 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 220 294 - -
Ssu4g1170 683 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 511 683 - -
Ssu4g1170 683 PANTHER ATP-BINDING CASSETTE TRANSPORTER 128 198 - -
Ssu4g1170 683 Pfam Plant PDR ABC transporter associated 357 420 IPR013581 -
Ssu4g1170 683 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 128 198 - -
Ssu4g1170 683 PANTHER ATP-BINDING CASSETTE TRANSPORTER 220 294 - -
Ssu4g1170 683 PANTHER ATP-BINDING CASSETTE TRANSPORTER 511 683 - -
Ssu4g1170 683 MobiDBLite consensus disorder prediction 454 476 - -
Ssu4g1170 683 PANTHER ATP-BINDING CASSETTE TRANSPORTER 294 509 - -
Ssu4g1170 683 Pfam ABC-2 type transporter 511 622 IPR013525 GO:0016020|GO:0140359
Ssu4g1170 683 Pfam ABC-2 type transporter 294 352 IPR013525 GO:0016020|GO:0140359
Ssu4g1170 683 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 294 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1170 Ssu-Chr4 18650066 18755460 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1170 K08711 - gmx:732607 369.777