Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1169 ATGACATTGCTTTTGGGCCCTCCAAGTTCTGGGAAGACCACGCTCCTGTTGGCCCTGGCTGGAAGACTTGATTCGAAACTAAAGTTCACTGGAAAGGTGACTTATAATGGTCATGGGATGAATGAGTTTGTACCCCAACGAACTGCTGCTTATGTCAGTCAAAATGATCTTCATATTGGAGAAATGACAGTCAGAGAAACCTTGGCCTTCTCAGCACGAGTCCAAGGAGTTGGACCTCGTTATGATTTGCTAACAGAGGTGTCTAGAAGAGAAAGGGAAGCAAATATTACACCTGATCCAGATATAGATGTCTATATGAAGGCTGTAGCAACTGAAGGCCAGAAAGCAAATTTTATTACAGATTATATTCTAAGGATTTTGGGACTGGAGGTCTGTGCTGATACTATTGTGGGAAATGCGATGTTAAGAGGTATCTCTGGTGGACAAAGAAAACGTGTTACAACAGGTAGGGAGCTGACGGTTGCTTTCACAATTGGGTCACTTGTATTGGCCATTCTTATAGCTATGAGTGGCTTCATCCTGTCAAAAGacaaaatgaaaaaatggtgGTTATGGGGCTTTTGGTCATCACCTATGATGTATGGACAGAATGccataataaataatgagtTCCTAGGAAAGAGATGGAGAcatGTTCTACCCAACTCAACTACACCGCTAGGTGTTGAAGTTCTGAAATCTCGCGGGTTCTTCACTCAGTCAAAGTGGTATTGGATAGGTGTTGGGGCACTGATTGGATATACGATAGTGTTCAATATTGCTTACATCCTTGCTCTCACTTACTTGAACCCAATTGTGCAGCATCAAGCTGTCAAATCAGAGCAATCTCAAAGCAATGAGCAGGATGGTGGAAACACTTCTACTAGGTCTTCATCCGGAACGATAGAAGCTGACAGAAGAAGAGGAATGGTTCTTCCCTTTGAACCACATTCCATCACCTTTGATGATGTAACATATTCTGTTGACATGCCACAGGTAATGAGAAACAAGGAACTTATTAAAGAATTGAGTACCCCAACCCCTGGTTCGAAGGACCTTCATTTTCCTTCAAAGTACTCAAGGTCCTTTGTTACTCAATGCATTGCTTGCTTATGGAAACAACATTGGTCTTACTGGCGCAATAATCAATACACCGCCCTAAGATTTCTCTACACAATCACTGTGGCCTTGTTGTTTGGGAGCATATATTGGAACCTTGGCTCAAAAATCAAAAAGCAACAAGATCTTTTCAATGCCATGGGCTCCATGTATGCTGCTGTTCTCCTTCTTGGTATTAAGAATGCTAATTCAGCACAACCGTTGGTGGCTGTTGAAAGAACAGTGTTTTATAGGGAAAAAGCTGCTGGAATGTATTCAGCTTTGGCATATGCTTTTGCTCAGGTCGTGGTCGAACTACCTCATGTTCTTTTACAAAGTGTGGTCTATAGCATTATAGTGTATGCAATGATTGGTTTTGAGTGGGCTGTCACTAAATTTTTCTGGTACCTTTTCGTCATGTACTTCACCTTCCTCTACTTCACCTACTATGGCATGATGTCTGCTGCCATAACCCCAAACCCATCCATAGCGGTTATACTTTCTTCTGGATTCTATGAAGTATGGAATCTCTTCTCAGGATTCATAATCCCACGACCAAGGATGCCTGTCTGGTGGAGATGGTACTATTGGGCAAATCCAGTAGCTTGGACTTTGTATGGGTTGGTGACATCACAGTTTGGAGATCTACAAGGCCACATTGAGTTTAATGGTAAAAGTACAACAGTGGAAGACTTTTTGAGAAATTACTTTGGTTTTAAGCATGATTTTTTGGGAGTGGTTGCAGCTGTACTTGTAGGATTTGCAGTAGCTTTTGCATCCATCTTTGCCATTGCCATAAAGATGCTTAATTTCCAAAGACGTTAA 1923 0.4119 MTLLLGPPSSGKTTLLLALAGRLDSKLKFTGKVTYNGHGMNEFVPQRTAAYVSQNDLHIGEMTVRETLAFSARVQGVGPRYDLLTEVSRREREANITPDPDIDVYMKAVATEGQKANFITDYILRILGLEVCADTIVGNAMLRGISGGQRKRVTTGRELTVAFTIGSLVLAILIAMSGFILSKDKMKKWWLWGFWSSPMMYGQNAIINNEFLGKRWRHVLPNSTTPLGVEVLKSRGFFTQSKWYWIGVGALIGYTIVFNIAYILALTYLNPIVQHQAVKSEQSQSNEQDGGNTSTRSSSGTIEADRRRGMVLPFEPHSITFDDVTYSVDMPQVMRNKELIKELSTPTPGSKDLHFPSKYSRSFVTQCIACLWKQHWSYWRNNQYTALRFLYTITVALLFGSIYWNLGSKIKKQQDLFNAMGSMYAAVLLLGIKNANSAQPLVAVERTVFYREKAAGMYSALAYAFAQVVVELPHVLLQSVVYSIIVYAMIGFEWAVTKFFWYLFVMYFTFLYFTYYGMMSAAITPNPSIAVILSSGFYEVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVTSQFGDLQGHIEFNGKSTTVEDFLRNYFGFKHDFLGVVAAVLVGFAVAFASIFAIAIKMLNFQRR 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1169 640 MobiDBLite consensus disorder prediction 280 300 - -
Ssu4g1169 640 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 160 IPR027417 -
Ssu4g1169 640 PANTHER ATP-BINDING CASSETTE TRANSPORTER 156 336 - -
Ssu4g1169 640 Pfam ABC-2 type transporter 157 211 IPR013525 GO:0016020|GO:0140359
Ssu4g1169 640 Pfam ABC-2 type transporter 365 579 IPR013525 GO:0016020|GO:0140359
Ssu4g1169 640 MobiDBLite consensus disorder prediction 280 302 - -
Ssu4g1169 640 PANTHER ATP-BINDING CASSETTE TRANSPORTER 1 157 - -
Ssu4g1169 640 Gene3D - 1 165 IPR027417 -
Ssu4g1169 640 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 335 640 - -
Ssu4g1169 640 Pfam Plant PDR ABC transporter associated 216 278 IPR013581 -
Ssu4g1169 640 Pfam ABC transporter 2 157 IPR003439 GO:0005524
Ssu4g1169 640 PANTHER ATP-BINDING CASSETTE TRANSPORTER 335 640 - -
Ssu4g1169 640 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 1 157 - -
Ssu4g1169 640 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 156 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1169 Ssu-Chr4 18600071 18606850 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1169 K08711 - ccaj:109803788 581.637