Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1168 ATGGAGGAGGAAGGTGACATGTACGACGGTGTTAGAGCTCAGTTCCCTCTTTCGTTCGGGAAGCAATCGAAGCCTCAAACCCCTCTGGAAGCCATCCACAATGCGACACGTCGTTCCAATTCCAATGCCAATCCCAATTCCAAAACCACCAACGAGCTTCCTTCTCTCTCCTCCTCTTCCAGGGAATGGCTCAGTTCCCTTCGTCCTTCCAAAAACCCTACCCTTCCCGATGACGACGATGGCCCCATGGTGGGACCGCCTCCGCCACCGCCCGCAGCTGCCGACGACGATGACGACGATGGCGAGATGATTGGCCCGCCCCCGCCCCCGCCGCCACCGAACGTGTCGGATTCCGAAGACGATTTGGATCAAGACGAGGTAGGGACACGCTTCCGGATTCCCCTGAGCAACGAGATTGTACTCAAGGGCCACACCAAGGTTGTGTCAGCTCTTGCTGTGGATCAAACCGGATCGAGAGTGCTTTCTGGAAGCTATGACTATACGGTGCACATGTATGACTTTCAAGGAATGAATGCTCGTTTGCAATCGTTTCGACAGCTGGAGCCATTTGAAGGTCATCAAGTTCGCAATTTAAGCTGGAGTCCAACTGCAGATCGCTTTTTGTGCGTCACTGGATCAGCTCAAGCAAAGATTTATGATCGTGATGGGCTTACTTTGGGAGAGTTTGTGAAGGGAGACATGTATATTCGTGATCTAAAGAATACCAAGGGCCACATATCTGGATTGACATGTGGAGAGTGGCATCCAAAAACTAAAGAGACCATTTTAACATCATCAGAGGATGGCTCACTACGCATATGGGATGTCAATGACTTCAAAAGTCAGAAGCAGGTCATTAAACCAAAGCTTGCGAGACCTGGAAGAGTTCCTGTCACCACATGTGCATGGGATCGTGATGGTAAATGCATTGCTGGTGGTATAGGAGATGGCTCGGTCCAGATTTGGAATATTAAGCCCGGATGGGGGAGTAGGCCAGATGTACATATTGAAAAAGGTCATGAGGATGATATTAGTAGTCTGAAATTTTCTAGCGATGGGAGAATCTTATTGTCAAGGAGTTTTGATGGTTCATTGAAGGTTTGGGATCTGCGCAAAATGAAAGAACCATTAAAGGTATTTGAGGATCTGCCAAATCACTATGGACAAACAAATATTGCCTTCAGTCCTGATGAGCAACTCTTTTTGACTGGAACATCTGTGGAAAGGGAGAGCTCGACAGGAGGTTTATTGTGCTTCTTTGATAGAGTAAACCTTGAGCTTGTTTCAAGAGTTGGCATATCACCCACTTGTAGTGTTGTTCAGTGTTCTTGGCATCCTAAACTGAATCAGATCTTTGCAACTACTGGTGATAAAAGCCAAGGAGGGACTCACATACTATATGATCCAACCCTAAGTAAGAGAGGAGCTCTTGTATGTGTTGCACGTGCACCAAGGAAAAAATCAATTGATGACTTTGAGGCAAAACCTGTCATTCACAATCCTCATGCTTTACCACTATTTAGAGATCAGCCAAGCCGAAAGCGTCAGCGAGAGAAAGTACTAAAGGACCCATTGAAGTCCCATAAGCCTGAACTACCTATTACAGGTCCTGGCTTTGGTGGACGAGTTGGTACTAGTCAAGGAAGTTTACTGACCCAGTATCTTCTAAAGAAAGGGGGTATGATCAAGGAGACATGGATGGAGGAAGATCCAAGGGAAGCTATCCTGAAATATGCTGATGTTGCAGCAAAGGATCCAAAGTTCATTGCTCCAGCATATGCAGAAACCCAACCTGAGCCAGTTTTTGCAAAGTCAGATTCTGAGGATGAAGAGAAATGA 1839 0.4676 MEEEGDMYDGVRAQFPLSFGKQSKPQTPLEAIHNATRRSNSNANPNSKTTNELPSLSSSSREWLSSLRPSKNPTLPDDDDGPMVGPPPPPPAAADDDDDDGEMIGPPPPPPPPNVSDSEDDLDQDEVGTRFRIPLSNEIVLKGHTKVVSALAVDQTGSRVLSGSYDYTVHMYDFQGMNARLQSFRQLEPFEGHQVRNLSWSPTADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTCGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDRDGKCIAGGIGDGSVQIWNIKPGWGSRPDVHIEKGHEDDISSLKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNHYGQTNIAFSPDEQLFLTGTSVERESSTGGLLCFFDRVNLELVSRVGISPTCSVVQCSWHPKLNQIFATTGDKSQGGTHILYDPTLSKRGALVCVARAPRKKSIDDFEAKPVIHNPHALPLFRDQPSRKRQREKVLKDPLKSHKPELPITGPGFGGRVGTSQGSLLTQYLLKKGGMIKETWMEEDPREAILKYADVAAKDPKFIAPAYAETQPEPVFAKSDSEDEEK 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1168 612 MobiDBLite consensus disorder prediction 509 529 - -
Ssu4g1168 612 SMART WD40_4 232 275 IPR001680 GO:0005515
Ssu4g1168 612 SMART WD40_4 330 369 IPR001680 GO:0005515
Ssu4g1168 612 SMART WD40_4 279 323 IPR001680 GO:0005515
Ssu4g1168 612 SMART WD40_4 134 173 IPR001680 GO:0005515
Ssu4g1168 612 SMART WD40_4 183 220 IPR001680 GO:0005515
Ssu4g1168 612 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 242 277 - -
Ssu4g1168 612 Gene3D - 94 227 IPR015943 GO:0005515
Ssu4g1168 612 MobiDBLite consensus disorder prediction 19 72 - -
Ssu4g1168 612 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 141 175 - -
Ssu4g1168 612 SUPERFAMILY WD40 repeat-like 118 458 IPR036322 GO:0005515
Ssu4g1168 612 ProSitePatterns Trp-Asp (WD) repeats signature. 262 276 IPR019775 -
Ssu4g1168 612 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 378 IPR001680 GO:0005515
Ssu4g1168 612 MobiDBLite consensus disorder prediction 593 612 - -
Ssu4g1168 612 ProSiteProfiles Trp-Asp (WD) repeats profile. 242 284 IPR001680 GO:0005515
Ssu4g1168 612 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 337 371 - -
Ssu4g1168 612 ProSiteProfiles Trp-Asp (WD) repeats profile. 141 182 IPR001680 GO:0005515
Ssu4g1168 612 CDD WD40 140 459 - -
Ssu4g1168 612 ProSitePatterns Trp-Asp (WD) repeats signature. 310 324 IPR019775 -
Ssu4g1168 612 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 2 612 - -
Ssu4g1168 612 MobiDBLite consensus disorder prediction 509 543 - -
Ssu4g1168 612 MobiDBLite consensus disorder prediction 1 123 - -
Ssu4g1168 612 Pfam WD domain, G-beta repeat 297 323 IPR001680 GO:0005515
Ssu4g1168 612 Pfam WD domain, G-beta repeat 240 275 IPR001680 GO:0005515
Ssu4g1168 612 Pfam WD domain, G-beta repeat 139 173 IPR001680 GO:0005515
Ssu4g1168 612 Pfam WD domain, G-beta repeat 335 369 IPR001680 GO:0005515
Ssu4g1168 612 Gene3D - 228 470 IPR015943 GO:0005515
Ssu4g1168 612 PRINTS G protein beta WD-40 repeat signature 262 276 IPR020472 -
Ssu4g1168 612 PRINTS G protein beta WD-40 repeat signature 356 370 IPR020472 -
Ssu4g1168 612 PRINTS G protein beta WD-40 repeat signature 310 324 IPR020472 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1168 244 442 Miscellaneous Gene Families AT5G08390 25.000 1.81e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1168 K24752 - gmx:100815380 1076.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1168 4 18577400 18583121 Ssu4g1168 4 18577400 18583121 ECH