Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1164 ATGGACTCAAAAGAAGAGGCTGAGCCTCATGAGGATAGGCCCTCGTCGCCAATGCGGGTCCTGCAGCAGTTATCTGAGGGGGCATTCAGAGTTGCTGGGGAAGCATTGCAGAATATGTATTCTGGTGGTGGCTCAAACATGCCACAAATGGTGCCTGGTGCGCATAGACGTAGTCAAAGTGAACTTGTTACTGGAGGATTTCATCGCAGTCACAGCTTTCAGAAATTAAAATCTCACGTGCACAAGGCCTGGCGGTGGGGCGGCAAACCGCGTGAAGAAGGTTTGGCGAGTTTCAACCCTGAGGTCATGGCAAACCAGAAACGTCAGTGGTATCGGCTTCATCCTAAAACTCTGGATTGTGTAAGTTATAAGGAGCCAACATCGCTCTTTGAACATTTTGTGATTGTGGGGCTGCATCCAGATGCTAATTTGGAAGTCGTGGAGCATGCGTTTGCAAGAAGGAAGAAGTgggaaaaagagaaggaaaaaccTGAATTTCTAGAGTGTAAAATGCTACAGCAACAAAGGCCACCAGAACCAACTTTGGAACCTCAGTTACTGTTCAAATATCCACCTGCAAAGAAGCTAACAATGCGTATGAAGGATTTAGCTTCCTTTTGCTTTCCTGAAGGCGTTAAGGCATGGTTGTTGGAGAGGACTCCATCTCTAAGTGAACTAAATGAACTTGTCTATGGACAGGAGCATTTAGGCAAAGATGATCATTCATTTGTCTTTACAGTCAAGGCAGCAGACAATACAACACTTTATGGAGTTTGCTTACATGTGCCTGAAATTGTTCAGAGGCCCCCTGGTATCTTAGGCATATCATCTCCTTTTTCTCACCCCTCTGGAGTATGCAGCCGTTTTCTGGTTTCTGCACCTCGCTGTTACTGTCTTCTGACTAGAGTGCCTTTCTTTGAATTACACTTTGAGATGTTAAACAGTCTCATTGCACAGGAGCGTCTGAATCGTATAACTCAGTTTATAAATGAGATTACTCTCACTGGCAGCATTCCATCAACACCCAAACTAGATGATCAAATGAGTTCAAATACTAACTCCCCAGATAGGGAGTCATTTAGTGACTGGATGACTTGTGCAATACCTCTTGATGGTGCAGCTGTGATTACTGCTGCTGCTGCTGGGATGATATCTGATGACGAAATCCCACAATTATCACCTAAAGTATGGGATTCTCGCTGTCAATCTCCTGTAAGTGTGACTGCCAGTGATGCTTCAGATTATTGGCAGGTTAGGGATATAGACAAGGATGGCAGGAAGAATCTGCAAGATCATGATAATTGTGCTTTTGAGACACCAGAAAATCATGATTCTATGGAAAGAATGCATGGAAATTGCGAAAATGACCAAGTTTCTCCAAAAGTTGGGACACCTTTATCTGCTCAGAGTCTTGTCTTGGACCGTCTTGGAAGTTCGGAATCACTTTTCagTCCAGCTAGAAGCATGGTATCAGAAGATGAGGACGATCTTTTCTCAAACAATGAAAGAGATTATGGGGACGAATTGTTTATGGAATGGGCTATGGAGAATAAGAATGATTTGCTACAGATAGTGTGTAGATATCATGCTGAACCTATTCCACCTCGAGGAAGTGAATTTGTGTTCCACCCTCTTGAACATCTACAAGCTATTCAGTATATACGACATTCAGTTGCTGCTCTTGGCTTCAGCAAAGATTGTTTAAATTGTTCTGAACCAGCTCGGGTCAATGCGCAGTTGGCGGCTGCTGAGGAAGCCTTATCATTATCAGTATGGACAATGGCAACTACTTGTCGAGTTCTGTCCCTTGATAGTGTGCTGGCATTAATTACAGGAGCGTTGTTGGAAAAACAGGTGGTAGTAGTGTGCCCAAATCTGGGTGTTCTATCTTCCACAGTGCTTTCTCTTATTCCCATGATTCGTCCATTTCAGTGGCAGAGTTTATTGCTCCCGGTTTTACCTCGTAGAATCATTGATTTTCTTGATGCCCCAGTTCCATATATTGTTGGCATACAACATAAACCAGATGACTTGAATATGAAAACTACTAATCTTGTTCTTGTTAATATACTGAAGGATCAGgTTACAATGTGTCACTTACCAAGACTTCCACAGCATAGAGAGCTTGTCTCTCAGTTGAGTCCAATTCATGCTAGACTTTCAAGTGAAAGATCAATTGCTAGAAAGCATCCTGTACATAGGTGCAACGAAGTCCAGGCTGAAGCTGCAACTCAGTTTTTGAATATAATGTGGCACTATTTGGAGTCACTTTGTTTGGATCTTAAATCCCACACGATAACTAGTGTACAATCAAATAACGACAGGGTTTCTTTACTACTTAAAGATAGCTTCATTGATTCCTTTCCTGCTAGGGACCAGCCATTCATTAAGCTATTTGTAGATACACAGCTCTTCACTGTTTTTTCAGACTCTCGTTTGTCAAGCTTTGAGAGTGGCGAGTCATAG 2466 0.4238 MDSKEEAEPHEDRPSSPMRVLQQLSEGAFRVAGEALQNMYSGGGSNMPQMVPGAHRRSQSELVTGGFHRSHSFQKLKSHVHKAWRWGGKPREEGLASFNPEVMANQKRQWYRLHPKTLDCVSYKEPTSLFEHFVIVGLHPDANLEVVEHAFARRKKWEKEKEKPEFLECKMLQQQRPPEPTLEPQLLFKYPPAKKLTMRMKDLASFCFPEGVKAWLLERTPSLSELNELVYGQEHLGKDDHSFVFTVKAADNTTLYGVCLHVPEIVQRPPGILGISSPFSHPSGVCSRFLVSAPRCYCLLTRVPFFELHFEMLNSLIAQERLNRITQFINEITLTGSIPSTPKLDDQMSSNTNSPDRESFSDWMTCAIPLDGAAVITAAAAGMISDDEIPQLSPKVWDSRCQSPVSVTASDASDYWQVRDIDKDGRKNLQDHDNCAFETPENHDSMERMHGNCENDQVSPKVGTPLSAQSLVLDRLGSSESLFSPARSMVSEDEDDLFSNNERDYGDELFMEWAMENKNDLLQIVCRYHAEPIPPRGSEFVFHPLEHLQAIQYIRHSVAALGFSKDCLNCSEPARVNAQLAAAEEALSLSVWTMATTCRVLSLDSVLALITGALLEKQVVVVCPNLGVLSSTVLSLIPMIRPFQWQSLLLPVLPRRIIDFLDAPVPYIVGIQHKPDDLNMKTTNLVLVNILKDQVTMCHLPRLPQHRELVSQLSPIHARLSSERSIARKHPVHRCNEVQAEAATQFLNIMWHYLESLCLDLKSHTITSVQSNNDRVSLLLKDSFIDSFPARDQPFIKLFVDTQLFTVFSDSRLSSFESGES 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1164 821 Pfam DENN (AEX-3) domain 590 691 IPR001194 -
Ssu4g1164 821 PANTHER SUPPRESSION OF TUMORIGENICITY 5 ST5 25 818 - -
Ssu4g1164 821 Gene3D - 590 756 IPR043153 -
Ssu4g1164 821 SMART DENN_cls 292 693 IPR001194 -
Ssu4g1164 821 ProSiteProfiles Tripartite DENN domain profile. 165 819 IPR037516 -
Ssu4g1164 821 PANTHER BNAA09G10210D PROTEIN 25 818 - -
Ssu4g1164 821 Gene3D - 118 341 - -
Ssu4g1164 821 Pfam uDENN domain 184 262 IPR005113 -
Ssu4g1164 821 SMART dDENN_cls 739 812 IPR005112 -
Ssu4g1164 821 SMART uDENN_cls 126 263 IPR005113 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1164 Ssu-Chr4 18531688 18540433 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1164 - - gmx:100814487 1479.15