Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1162 ATGGCGGAATTAGAAAATTTGCTTTTGGAGGCGGCAGGGAGAACCCGACACTCTCGTCCGCCTTCAGGAAGAGGACACTGGGATGGTGGGAGTGATTCTGGGAAAGATGATTCGGATGATGAGCATAATTATTCAGGCCGAAAGCCCTCTGGCTTGCAAGTTCCCCTAAAGAAGAGATTTGATTCAATGGAAAGAGGTGATGAGGAGGGAAGTCAGGATGAAGGGGATGATGATGCTGGTGGGCAATCTGATCACGAGGGTGATAGCAGTGATGATTCTGATATTGGTGATGATCTTTATAAGAATGAAGATGACAGGCGTAAGCTTTCTGAGATGACTGAACTTCAAAGAGAGATGATATTGTCAGACAGGGCTACCAAGAAGAATGATAAAGATTTATTGGGGAAGATAGCATTGAAGCGTGAGAAGGGAAAGACAACTGTACCCGGGAAACAGACTCCACCTCTCCCGTCATCTCGCGTGCGTTCATCAGCCAGGTCTGCTGACAGGTCAACTGCCAAGGATGGTGCATTAAATGAATTGCGTGCAAAACGATTAAAGCAGCAAGATTCAGAAGCAAACCGCAGGCTAAGTGAGGCATCTAGAAGTTCAGGGCCTAGGCATGTTTCACCAAAGCGCAAACCTTTCCCTTCAACAAGTCTTAGTAGCTCAAGTGATAGTGAAAGTGAAAGTAGGTCCGACAGTGATGATGACGGGTCGAGTGGAGATGATAGAATCATTGACAGTGATGATGACAGGATAATGTTAGGATCTGAAGGGCTTTCATttgaggatataaaagaaattaccatTTGCAGATCAAAACTTGCAAAATGGTTTATGGAGCCCTTTTTTGAGGAGTTAATTGTTGGTTGTTTTGTAAGAGTTGGTATTGGTAGATCGAAGTCAGGGCCTATCTACAGGCTCTGCATGGTAAAAAATGTTGATGCCACAGATCGTGATCGGCagtataaattagaaaataaaaccacATACAAGTACTTAAATCTTGTCTGGGGAAATGAAACGTCTGCTGCAAGGTGGCAAATGGCTATGGTTAGCGACTCTCCTCCACTTGAGGACGAGTTCAACCAGTGGGTTAAGGAAGTAGGGCAAAGAGGTGGCCGGATGCCAACAAAGCAAGAAGTGGTAGAAAAAAAGCAAGCTATACAAAAGATCAACTTGTTTGTTTACTCAGCAGCTACTGTGAAGCAGATGTTACAGGAGAAAAAATCTACCTCATCAAGGCCACTAAATATTGCAGCTGAGAAGGATCGGTTAAGGACGGCATTGGAAATAGCACGTAGTAAACATAATGAAGCTGAAGTGAAGAGGATCATGACAAGATTGCAAGAATTGGAGGAATCTCGGCAAGCTAAGGAGAAGGACGCCAGGGCTTTGAAGCTTGCTGAAATGAACAGAAAGAACAGGTTTGAGAACTTCAAAAATGCTTCTGAATTGAAGCCAGTAAATACTGAATTGAAAGCAGGGGAGGCAGGTTATGATCCCTTTTCAAGGAGATGGACTAGATCAAGGAACTACTACGCCGCAAAACCAGCTGAAGAGGCTGCAGCTGAAAATAATAGTGCCGGTGGCGCAGTGGCTGATACAGGCAGCTATCAGACAGGAGCAGCTGAGACAGTGGCAGTTGGCATGGCGGCTACTGCTGCGGCTTTGGAAGCTGCTGCCAGTGCTGGGAAGTTAGTAGACACAAGTGCTCCGGTGGATCAAGGGACAGAGTCAAATGTGCTGCACAATTTTGAACTGCCAATATCATTAGCTATACTCCAAAAGTTTGGTGGAGCCCAAGGAGTTCAGGCAGGATTTAtgacaaaaaaacaaagaatagaATCAACCGTTGGATTTCAAGTCCTGGAAAATGATGGTGGGAGGCATGCGCTGACATTAACAGTTAGTGATTACAAGAGAAGAAGAGGGCTTCTTTGA 1947 0.4386 MAELENLLLEAAGRTRHSRPPSGRGHWDGGSDSGKDDSDDEHNYSGRKPSGLQVPLKKRFDSMERGDEEGSQDEGDDDAGGQSDHEGDSSDDSDIGDDLYKNEDDRRKLSEMTELQREMILSDRATKKNDKDLLGKIALKREKGKTTVPGKQTPPLPSSRVRSSARSADRSTAKDGALNELRAKRLKQQDSEANRRLSEASRSSGPRHVSPKRKPFPSTSLSSSSDSESESRSDSDDDGSSGDDRIIDSDDDRIMLGSEGLSFEDIKEITICRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDATDRDRQYKLENKTTYKYLNLVWGNETSAARWQMAMVSDSPPLEDEFNQWVKEVGQRGGRMPTKQEVVEKKQAIQKINLFVYSAATVKQMLQEKKSTSSRPLNIAAEKDRLRTALEIARSKHNEAEVKRIMTRLQELEESRQAKEKDARALKLAEMNRKNRFENFKNASELKPVNTELKAGEAGYDPFSRRWTRSRNYYAAKPAEEAAAENNSAGGAVADTGSYQTGAAETVAVGMAATAAALEAAASAGKLVDTSAPVDQGTESNVLHNFELPISLAILQKFGGAQGVQAGFMTKKQRIESTVGFQVLENDGGRHALTLTVSDYKRRRGLL 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1162 648 SUPERFAMILY Plus3-like 262 392 IPR036128 GO:0003677
Ssu4g1162 648 MobiDBLite consensus disorder prediction 167 197 - -
Ssu4g1162 648 Coils Coil 424 470 - -
Ssu4g1162 648 Pfam Plus-3 domain 265 369 IPR004343 GO:0003677
Ssu4g1162 648 PANTHER PLUS-3 DOMAIN PROTEIN 1 648 - -
Ssu4g1162 648 Coils Coil 183 203 - -
Ssu4g1162 648 PANTHER UNCHARACTERIZED 1 648 - -
Ssu4g1162 648 MobiDBLite consensus disorder prediction 29 46 - -
Ssu4g1162 648 SMART rtf1 260 372 IPR004343 GO:0003677
Ssu4g1162 648 ProSiteProfiles Plus3 domain profile. 260 395 IPR004343 GO:0003677
Ssu4g1162 648 MobiDBLite consensus disorder prediction 82 147 - -
Ssu4g1162 648 Gene3D - 261 393 IPR036128 GO:0003677
Ssu4g1162 648 MobiDBLite consensus disorder prediction 67 81 - -
Ssu4g1162 648 MobiDBLite consensus disorder prediction 1 251 - -
Ssu4g1162 648 MobiDBLite consensus disorder prediction 234 251 - -
Ssu4g1162 648 MobiDBLite consensus disorder prediction 151 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1162 Ssu-Chr4 18509697 18511643 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1162 K15178 - gmx:100793184 917.531