Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1161 ATGGCTGCAGATTCCAACTCAAACCTTAGAGTCATCATTGAAAGAAACCCTTCCCAGTCACGCCTAGCTGAGTTGAACATCAAGTGTTGGCCCAAGTGGGGTTGCTCTCCGGGGAAGTATCAATTGAAGTTTGATGCGGAAGAGACATGCTATTTGTTGAAAGGGAAGGTGAAGGCATACCCAAAAGGGTCATCAGAGTTTGTGGAGTTTGGAGCTGGGGATCTTGTGACAATTCCAAAAGGACTCAGTTGCACTTGGGACGTGTCTGTTGCTGTGGATAAGTACTACAAGTTTGAATCAAATTCTTCTTCTACTTCATCATCTTCACCACCATCTTGTTAA 342 0.4444 MAADSNSNLRVIIERNPSQSRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYPKGSSEFVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFESNSSSTSSSSPPSC 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1161 113 Pfam EutQ-like cupin domain 23 96 IPR008579 -
Ssu4g1161 113 Gene3D Jelly Rolls 2 98 IPR014710 -
Ssu4g1161 113 PANTHER RMLC-LIKE CUPINS SUPERFAMILY PROTEIN 6 106 - -
Ssu4g1161 113 PANTHER OS04G0445200 PROTEIN 6 106 - -
Ssu4g1161 113 CDD cupin_TM1112-like 30 98 - -
Ssu4g1161 113 SUPERFAMILY RmlC-like cupins 21 96 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1161 Ssu-Chr4 18501317 18501938 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1161 - - gmx:100793722 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1161 4 18501317 18501938 Ssu4g1161 4 18501317 18501938 ECH
Ssu4g1161 4 18501317 18501938 Ssu7g2271 7 44659099 44659588 PCT