Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1160 ATGACGGGATTCGCACGCCCTCGCGATCACGCCTCCTCTTCGCGCAATTCCAACAGCAGTGGTAGCAATGTATTTAATTTGCTTGCAAGGAGAGAGATCTCGCCCAGAACAAAATACGTGGCAAAATGGCATTGGGGAGAAGCTTTGAAATCAAAGTCTAGTCCTTATTCTCGTCCTAAAAATGAAGTTGTGAGAGATGCAAGACGTGGTCTCCTCTCTTGGGTTGAGGCCGAGTCGTTGCGGCATTTGTCAGCTAAGTATTGTCCTTTATTACCTCCTCCACGGTCTACTATTGCAGCAGCATTTAGTTCAGATGGGAAAGTTCTTGCCTCCACACATGGTGACCACACAGTAAAGATAATTGATTGTGAAACTGGAAGTTGCTTAAAGGTGTTAGTTGGCCATAGGAGGACGCCTTGGGTGGTTAGGTTCCATCCATTGCATCCACATATACTTGCTAGTGGGAGCTTGGATCAAGAAGTTCGTTTATGGGATGCTAACACATCAGAGTGCATAATATCTCATCATTTCTATCGCCCCATTGCATCTATTGCTTTTCATGCCAAAGGTGAAATAATTGCCGTTGCATCTGGCCACAAGTTGTACATATGGCACCACAACAAGCAAGGCGTCGAAGTATCCTCACCAATGTTTGTGTTGAAGACAAAGCGCTCACTTCGAGCTGTGCATTTTCACCCACATGCCGCACCTTATCTTTTAACTGCGGAGGTCAATGATCTTGACTCTTCAGATTCCTCAATGACGGAGGCAACATCTCTTGGCTATTTACAATATCCTCCGCCTGCTGTTTTTGTCACAAATATTCATCCTCCAGAACATATTAGTTTGTCCAGCGAACTACCTTACGTGTCATTACCTTTCTTCTTTATGCCCTCATATACTGTTGATGAGTCAAGAGCAGAACTACAGCATGCTAGTCATGATGTTAGCTCAGGTAGCATGCAAATCGAGTCTTCTGCCATGGTACAGTTACAAGCAGACACGAGTGCAACAGAGCAATATGAGGCTACAGTGTCTCCCATGGATACATTCCCTGAGATGCCCACTAGCTCTCAAACTGGTACAGAATATCCCGCTCATACTGCTTTCTCTAATGGAATGGGAATTGGCCTCAGTAATCTCACAATGGATGGTATGGAGACTGATGAAACCAGACCTGCTGAAGGAAGCCAACATGAAAACCCTTCTAATACCTATTCTCTTAATGGTGTGCTACACGGACTGTCTAGGCAAACTGCAAACCGTGGGGTTCTCTCAGAGTTTGGTCAATTTCATCAGTTTTTTCCTTCAAGTTCGAGAGACCCAAGTGGATGGGAGCTACCTTTTCTCCAAGGATGGTTAATGGGTCAAAGCCAAGTTGGTGTTCCTTCAATGCTTCCTCACATGGGTGCTAGTTGTGACATTCTAGCCCAACAGATTGGTTCTTCCATAATGGCATCTAATCTTTCCACTTCTAATGTTGATGCAGCAATGCCATCTTCAGCAATACCTGGCAGCATCAGCATGCCGGGCTCTTCAATGAGATCAGGTTTACGGAATCATTTTTCACAATCCCGTGTACCTGTATCTGAATCTGGTAATCTTGCTACTTCTATTAATACCTCACATGATGGATCCGATATCCAAACCATTGTAAGTCGAATTCAGTCAGAACTTGCCACATCAGTGGCTGCTGCAGCAGCTGCAGAGTTGCCTTGCACTGTGAAGTTAAGAGTATGGTCGCATGACATAAAAAATCCCTGTGCCCCACTTAGTGCTGACAGATGTCGTCTAACCATACCACATGCTGTCCTCTGCAGTGAAATGGGTGCTCATTTTTCACCATGTGGTAGATTTTTAGCTGCTTGTGTTGCATGTATGCTTCCTCATATAGAAGCTGATCCAGGATTACAAACTCCAGTACACCAAGAGCCTGGTGTTGCAACATCACCAACCCGACATCCAATCTCAGCACACCAAGTTATGTATGAGCTGCGGATATATTCCCTCGAGGAGGCAACATTTGGGTCGGTGCTTGCTTCGCGGGCAATTAGAGCAGCTCATTGCCTGACTTCAATTCAGTTCTCACCTACGTCTGAGCACATACTACTTGCCTATGGTCGACGCCATGGCTCTCTTCTTAAAAGCATTGTCATTGATGGAGAAACAACATTACCTATATATACAGTGTTAGAGGTATACAGAGTGTCAGATATGGAACTTGTTAGGGTGCTTCCTAGTGCAGAAGACGAGGTCAATGTGGCATGCTTTCATCCTTTTGCTGGGGGAGGACTAGTTTATGGAACAAAGGAAGGAAAGCTTAGGGTCCTCCAGTATGACGGTGCTCATGCAGTGAATGGCTCTGGACCAAGTTACTTTCCTGAGGAGACCATCATTGGAGTCAGTCAGTGA 2412 0.4527 MTGFARPRDHASSSRNSNSSGSNVFNLLARREISPRTKYVAKWHWGEALKSKSSPYSRPKNEVVRDARRGLLSWVEAESLRHLSAKYCPLLPPPRSTIAAAFSSDGKVLASTHGDHTVKIIDCETGSCLKVLVGHRRTPWVVRFHPLHPHILASGSLDQEVRLWDANTSECIISHHFYRPIASIAFHAKGEIIAVASGHKLYIWHHNKQGVEVSSPMFVLKTKRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSLGYLQYPPPAVFVTNIHPPEHISLSSELPYVSLPFFFMPSYTVDESRAELQHASHDVSSGSMQIESSAMVQLQADTSATEQYEATVSPMDTFPEMPTSSQTGTEYPAHTAFSNGMGIGLSNLTMDGMETDETRPAEGSQHENPSNTYSLNGVLHGLSRQTANRGVLSEFGQFHQFFPSSSRDPSGWELPFLQGWLMGQSQVGVPSMLPHMGASCDILAQQIGSSIMASNLSTSNVDAAMPSSAIPGSISMPGSSMRSGLRNHFSQSRVPVSESGNLATSINTSHDGSDIQTIVSRIQSELATSVAAAAAAELPCTVKLRVWSHDIKNPCAPLSADRCRLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEADPGLQTPVHQEPGVATSPTRHPISAHQVMYELRIYSLEEATFGSVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLQYDGAHAVNGSGPSYFPEETIIGVSQ 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1160 803 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 132 170 - -
Ssu4g1160 803 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 1 802 - -
Ssu4g1160 803 MobiDBLite consensus disorder prediction 7 21 - -
Ssu4g1160 803 ProSitePatterns Trp-Asp (WD) repeats signature. 152 166 IPR019775 -
Ssu4g1160 803 ProSiteProfiles Trp-Asp (WD) repeats profile. 132 174 IPR001680 GO:0005515
Ssu4g1160 803 MobiDBLite consensus disorder prediction 1 21 - -
Ssu4g1160 803 SUPERFAMILY WD40 repeat-like 99 241 IPR036322 GO:0005515
Ssu4g1160 803 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 1 802 - -
Ssu4g1160 803 Pfam WD domain, G-beta repeat 126 165 IPR001680 GO:0005515
Ssu4g1160 803 Gene3D - 81 254 IPR015943 GO:0005515
Ssu4g1160 803 SMART WD40_4 168 205 IPR001680 GO:0005515
Ssu4g1160 803 SMART WD40_4 84 122 IPR001680 GO:0005515
Ssu4g1160 803 SMART WD40_4 738 778 IPR001680 GO:0005515
Ssu4g1160 803 SMART WD40_4 125 165 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1160 99 267 Miscellaneous Gene Families AT5G08390 24.725 3.44e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1160 - K17985 gmx:100817857 1466.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1160 4 18490223 18496766 Ssu4g1160 4 18490223 18496766 ECH