Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1158 ATGGAGAATCCTTCTGATGTGCTTGGTTCCAAAGGATTGATTGGAAGGCATGAGTTTGTGAGGATCATAATTCAGTGTCTATATTCATTAGGGTACAGTAACTCTGCGTCGTGTTTGGAATCGGAATCCGGCGTTTCGTACAAGTCCAACGAGCTTCGGTTGCTTGAGTCACTTATTTTGAATGGGAATTGGGACGATAGCATTGATTATCTCAATTCCATAAAGGATGTGTCGGGTGAAACTAGGGAATCTGCTCTGTTTCTTGTCTTCAGACAGTGTGTTATGGAGTATCTGAATTGCGGCAAGGATGCTTTAGCTTTAGGGTTGTTGAGGAAGCAGATTTCTGCCTTGGATGTGGACAAATGCAAAGTTCACAGCCTGGCTAAGTGCTTACTTTCGTGGAAGGATAGGGAGTTAGGTGCAGTTGATGGTGGTGATGTTGTGGTGCATGATTTGCGAAGAAAGTTGTTAGCAGATTTGGAGAAATTGTTGCCTCCTCCAATTTCAGTGCCTGAAGCAAGGCTGGAGCACTTGGTAGAAACTACTGTTACGGCCTGGGTGGATTCTTGTATGTATCATAGTCCATCGAATCCAATTTCGCTTTATGAGGATCATTGCTGTAGCAGGGACCAAATTCCTACTACAACGACTCAGATATTGACTGGACATAAAAATGAAGTTTGGTTTGttcaattttctaataatgGGGAGTACTTAGCCTCTTCATCCAATGATTTCACAGCCATCATATGGAAGGTGCTGGAGGATGGGAAGTTGACATTGAAACATACACTTTGTGGTCACCAATGTGCTGTATCTTTTGTAGCATGGAGTCCTGATGACACCAAGTTGCTTACATGTGGGAACACAGAAGTTTTGAAACTGTGGGATGTTGAAACAGGTACATGCAAGCACACATTTGGGAATCAAGGCTTTGTTGTCAGCTCTTGTGCCTGGTTTCCCAACTCAAAACAGTTTGCGTGTGGCAGTGCTGTCCCTGAAACGGGTGTTTGCATGTGGGATTGTGATGGAAACGTGATCAAATCATGGAGAGGAACGAGGATGCCCAAGGTCGTAGATCTTGCCTGTTACTCCAGATGGTGA 1104 0.4366 MENPSDVLGSKGLIGRHEFVRIIIQCLYSLGYSNSASCLESESGVSYKSNELRLLESLILNGNWDDSIDYLNSIKDVSGETRESALFLVFRQCVMEYLNCGKDALALGLLRKQISALDVDKCKVHSLAKCLLSWKDRELGAVDGGDVVVHDLRRKLLADLEKLLPPPISVPEARLEHLVETTVTAWVDSCMYHSPSNPISLYEDHCCSRDQIPTTTTQILTGHKNEVWFVQFSNNGEYLASSSNDFTAIIWKVLEDGKLTLKHTLCGHQCAVSFVAWSPDDTKLLTCGNTEVLKLWDVETGTCKHTFGNQGFVVSSCAWFPNSKQFACGSAVPETGVCMWDCDGNVIKSWRGTRMPKVVDLACYSRW 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1158 367 Gene3D - 205 365 IPR015943 GO:0005515
Ssu4g1158 367 ProSiteProfiles LIS1 homology (LisH) motif profile. 15 47 IPR006594 GO:0005515
Ssu4g1158 367 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 48 105 IPR006595 -
Ssu4g1158 367 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 253 - -
Ssu4g1158 367 Pfam WD domain, G-beta repeat 217 252 IPR001680 GO:0005515
Ssu4g1158 367 Pfam WD domain, G-beta repeat 261 297 IPR001680 GO:0005515
Ssu4g1158 367 Pfam WD domain, G-beta repeat 301 341 IPR001680 GO:0005515
Ssu4g1158 367 SMART WD40_4 300 341 IPR001680 GO:0005515
Ssu4g1158 367 SMART WD40_4 258 297 IPR001680 GO:0005515
Ssu4g1158 367 SMART WD40_4 213 252 IPR001680 GO:0005515
Ssu4g1158 367 PANTHER WD REPEAT PROTEIN 26-RELATED 6 363 - -
Ssu4g1158 367 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 306 IPR001680 GO:0005515
Ssu4g1158 367 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 253 IPR001680 GO:0005515
Ssu4g1158 367 SUPERFAMILY WD40 repeat-like 211 351 IPR036322 GO:0005515
Ssu4g1158 367 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 301 - -
Ssu4g1158 367 SMART ctlh 48 105 IPR006595 -
Ssu4g1158 367 SMART Lish 15 47 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1158 Ssu-Chr4 18469355 18475804 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1158 218 343 Miscellaneous Gene Families AT5G08390 30.952 6.33e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1158 K22382 - gmx:100818922 662.914