Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1145 ATGGCGGAGGTTCCGTCTCTCATTTCTCTGTGCATCGACGCCCTCACACAGCAACTTCTCCGTGCATGCGATGATCTTCTTCCCTCTATTTACGACCTTCCTTTTCACTTACTCGACACCTTAATCACGCGTTTGCCCCCTTTCCCATTGCGCACATTCCACCACCACCTGCCATTCGACGAGGAAGGGTTTTCTCACGATGACTCAACGAAAAAGAGAAAACGCGCAAGGGATTGGAATCTAAATTCAGCTTGGCAGAGGTTGTTTCAGCAACGCTGGCCTCACCGCGTTAAGCAGATTCAGATTCACCCAACGGATTGGCAGCAACTCTATTGGGAAACCCATTTGCAAGATTGTTTGGATGAAGCAGCGGAGGTAGCACTAATCCCATCGTTTAAAGGATATATTGGTGACATACACATTTCCGACAGCATACTGAAATTTATTGGCTTTGTGGGGAATACAAGCCATTCAACTTGTGACCATTCAAAATTGTCATACCATTGCCTACAATTTGGCAGCCAAGTGAGTTGTCTGAGGCTGCAAAATGTTCTATGTACTGCAGAAACTAGTGGTTTGTTGAGGGAATGCAAGTTGCAGAGTCTGGTACTAAGATGTATCAGATCCAAGGAACAAATTGATGGATTATGCAAACTTATTGCTCAACATTGTAGAACGTTAACGTCTCTGGAATTTGTTCACTGCACACTCTCCACGGATTTTATTAATGCAATATTTGGTTCTCTAGTCATAGAGAGTGTACAAAAACATGAGATCCAACATTTGTCAATCATTGCCTCAAGTTTTCCAGAACCATGCACAGTTTCTTTACCTAGTGGACTTGTGTCATTTTTGTCTTCAGGAAGGTCCTTGTGCTCATTAAAATTATCTGACAACTGCCATGGACGGACTTTTGCCAAAGCTCTCTTTGTGACTCTTCTCAATCTTTCCTCTGGCATATCGGTCCTTGACCTCTCTGCAAACAAAATAGCAGGATGGCTTTCTGACTTTAACAAGAGATTCTTGAGTGGTTCACATCTGTCTTTTGGAAATGGAACGTCCTTGAAACTGTTGCGTGTACTCAATCTGAGGgaaaacaatttacaaaaagatGATGCTGAAAGTCTTAGATATGCTCTTGAACATGTGCCCAACTTGGAGGAGCTGGATATAAGTGACAATTCAATTGAAGATGAAGGAATCAGGAATTTAATTCCCTATTTTGTTGGAGCATCTGAAACATGTCCTCACATAACTTGTTTGAAATTAGAGAATTGTGATCTGTCCGGTGTTGGAGTGAATCATTTCCTACATGTCCTTTCTACTTTCAAAGGACCATTGAAGTCTCTTTCTGTTGCTGACAATTACCTTGGCAGTCAAGTAGCTGAAGCATTGGGAAAATTTTTGAGCACCCCAATCGAAGTACTTGACATTGCAGGCATTGGATTGGGTTCTTATGGTTTTCAAGAGCTTCAAAATCTAATAAAAGAGGAAATTAAGCtggtgaaaattaatataagCAAAAATCGTGGTGGGATTGAAACTGCCAAATTTTTGTCCAAACTCTTGTCACAGGCTCCACAGCTAGTTGATGTGAATGCAGCCAGTAATCTTATGCCAATAGAATCACTGGCCATCATCTGCTCTGCATTAAAGTTTGCAAAAGGATTTTGCCTTGGGATTAATTTGCAATGA 1695 0.4094 MAEVPSLISLCIDALTQQLLRACDDLLPSIYDLPFHLLDTLITRLPPFPLRTFHHHLPFDEEGFSHDDSTKKRKRARDWNLNSAWQRLFQQRWPHRVKQIQIHPTDWQQLYWETHLQDCLDEAAEVALIPSFKGYIGDIHISDSILKFIGFVGNTSHSTCDHSKLSYHCLQFGSQVSCLRLQNVLCTAETSGLLRECKLQSLVLRCIRSKEQIDGLCKLIAQHCRTLTSLEFVHCTLSTDFINAIFGSLVIESVQKHEIQHLSIIASSFPEPCTVSLPSGLVSFLSSGRSLCSLKLSDNCHGRTFAKALFVTLLNLSSGISVLDLSANKIAGWLSDFNKRFLSGSHLSFGNGTSLKLLRVLNLRENNLQKDDAESLRYALEHVPNLEELDISDNSIEDEGIRNLIPYFVGASETCPHITCLKLENCDLSGVGVNHFLHVLSTFKGPLKSLSVADNYLGSQVAEALGKFLSTPIEVLDIAGIGLGSYGFQELQNLIKEEIKLVKINISKNRGGIETAKFLSKLLSQAPQLVDVNAASNLMPIESLAIICSALKFAKGFCLGINLQ 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1145 564 PANTHER RNI-LIKE SUPERFAMILY PROTEIN 1 561 - -
Ssu4g1145 564 Pfam Leucine Rich repeat 384 403 IPR001611 GO:0005515
Ssu4g1145 564 Pfam Leucine Rich repeat 414 433 IPR001611 GO:0005515
Ssu4g1145 564 Gene3D Ribonuclease Inhibitor 338 558 IPR032675 -
Ssu4g1145 564 Gene3D Ribonuclease Inhibitor 136 337 IPR032675 -
Ssu4g1145 564 SUPERFAMILY RNI-like 179 553 - -
Ssu4g1145 564 ProSiteProfiles Leucine-rich repeat profile. 385 405 IPR001611 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1145 - - gmx:100817679 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1145 4 18216238 18224620 Ssu4g1145 4 18216238 18224620 ECH