Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1134 ATGTCGGGTCGTGGAAAGGGAGGCAAGGGTTTGGGAAAGGGAGGAGCGAAGAGGCACAGGAAGGTGCTCCGAGATAACATCCAGGGCATCACCAAACCCGCGATTCGGCGTCTGGCTCGGAGAGGCGGCGTTAAGCGAATCAGCGGCCTCATCTACGAGGAAACCCGTGGTGTCCTCAAGATCTTCCTCGAGAACGTTATTCGCGACGCTGTTACCTACACCGAGCATGCTCGGAGGAAGACCGTTACCGCCATGGACGTTGTTTACGCCCTCAAGAGGCAGGGCAGGACTACTCTATGGCTTCGGTGGTTGATTTTGGTGTCTCAGATTTAG 333 0.5616 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTTLWLRWLILVSQI 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1134 110 SUPERFAMILY Histone-fold 3 98 IPR009072 GO:0046982
Ssu4g1134 110 CDD H4 18 97 IPR001951 GO:0003677|GO:0030527
Ssu4g1134 110 Pfam Centromere kinetochore component CENP-T histone fold 38 98 IPR035425 -
Ssu4g1134 110 MobiDBLite consensus disorder prediction 1 20 - -
Ssu4g1134 110 Gene3D Histone, subunit A 2 101 IPR009072 GO:0046982
Ssu4g1134 110 PRINTS Histone H4 signature 62 76 IPR001951 GO:0003677|GO:0030527
Ssu4g1134 110 PRINTS Histone H4 signature 89 100 IPR001951 GO:0003677|GO:0030527
Ssu4g1134 110 PRINTS Histone H4 signature 5 16 IPR001951 GO:0003677|GO:0030527
Ssu4g1134 110 PRINTS Histone H4 signature 20 39 IPR001951 GO:0003677|GO:0030527
Ssu4g1134 110 PRINTS Histone H4 signature 77 89 IPR001951 GO:0003677|GO:0030527
Ssu4g1134 110 PRINTS Histone H4 signature 40 60 IPR001951 GO:0003677|GO:0030527
Ssu4g1134 110 SMART h44 16 90 IPR001951 GO:0003677|GO:0030527
Ssu4g1134 110 PANTHER HISTONE H4 1 97 - -
Ssu4g1134 110 PANTHER HISTONE H4 1 97 - -
Ssu4g1134 110 ProSitePatterns Histone H4 signature. 15 19 IPR019809 GO:0000786|GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1134 Ssu-Chr4 18027552 18027884 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1134 K11254 K11253 cpic:101952834 177.178