Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1104 ATGGCTATAGCCGCCACCATTTCCGTTCCTCTCACCTCCCCGACTCGCAGCACTCTCGCCTCTGTCAATAATCTCTTCGCTCGTTCTCCCAGATCCACTTTGCCCACGCCGCAACGCACTTTCAAATACCCTAATTCCCGCCTCGTCGCGTCCTCCATGAGCACCGACGCCCCCGTCAAAACCTCCTCCGCCTCCTTCCTCCACCGCGGAGGGACCGGCTTTCTCCACTTCGCCAAGTATCACGGCCTTGGAAACGACTTCGTTTTGATTGACAATAGAGATTCCTCCGAGCCCAGGATCAGTCCAGAGAAAGCGGTGCAACTGTGTGATCGGAACTTCGGTGTTGGAGCTGACGGAGTTATCTTCGTCTTGCCTGGCATCAATGGCACCGATTACACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTCGTTTCTCAGCTTGAGAATTTACGTGGGAGGCATAGCTTTACCATACATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTGGAGGATGGAAATGTCAGAGTTGACATGGGGGAACCGATTCTTAAAGCCTCAGATGTGCCTACTAAATTACCTGCTAATAAGGATAATGCTGTTGTTAAATCGGAGCTAGTTGTAGATGGAGTTATCTGGCATGTGACCTGTGTTAGCATGGGAAATCCACACTGTGTAACTTTCAGTAGAGAAGGAAGCCAGCAGAATTTGCTTGTTGATGAATTGAAGCTAGCAGAAATTGGCCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAGAGTTTGTGCAAGTATTGTCTAATTCTCACCTTAAAATGCGTGTTTGGGAGCGTGGAGCAGGAGCAACCCTAGCCTGTGGAACCGGAGCTTGTGCAACTGTTGTTGCAGCAGTTCTTGAGGGTCATGCTGGGAGGAATTGCACGGTTGATCTCCCTGGAGGGCCTCTTCAGATTGAGTGGAGGGAGGAAGATAATCATGTCTATATGACAGGCTCAGCCGATGTAGTTTATTATGGATCTTTGCCCCTTTGA 1083 0.4912 MAIAATISVPLTSPTRSTLASVNNLFARSPRSTLPTPQRTFKYPNSRLVASSMSTDAPVKTSSASFLHRGGTGFLHFAKYHGLGNDFVLIDNRDSSEPRISPEKAVQLCDRNFGVGADGVIFVLPGINGTDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLRGRHSFTIHTGAGLIIPEVLEDGNVRVDMGEPILKASDVPTKLPANKDNAVVKSELVVDGVIWHVTCVSMGNPHCVTFSREGSQQNLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMRVWERGAGATLACGTGACATVVAAVLEGHAGRNCTVDLPGGPLQIEWREEDNHVYMTGSADVVYYGSLPL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1104 360 Pfam Diaminopimelate epimerase 231 352 IPR001653 GO:0008837|GO:0009089
Ssu4g1104 360 Pfam Diaminopimelate epimerase 77 197 IPR001653 GO:0008837|GO:0009089
Ssu4g1104 360 SUPERFAMILY Diaminopimelate epimerase-like 218 358 - -
Ssu4g1104 360 PANTHER DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC 37 359 IPR001653 GO:0008837|GO:0009089
Ssu4g1104 360 ProSitePatterns Diaminopimelate epimerase signature. 138 152 IPR018510 GO:0005737|GO:0008837|GO:0009089
Ssu4g1104 360 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 59 198 - -
Ssu4g1104 360 PANTHER DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC 37 359 - -
Ssu4g1104 360 Hamap Diaminopimelate epimerase [dapF]. 75 360 IPR001653 GO:0008837|GO:0009089
Ssu4g1104 360 TIGRFAM DapF: diaminopimelate epimerase 76 358 IPR001653 GO:0008837|GO:0009089
Ssu4g1104 360 SUPERFAMILY Diaminopimelate epimerase-like 75 204 - -
Ssu4g1104 360 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 199 350 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1104 K01778 - gmx:100784731 663.685