Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1099 ATGTTCACCCTCACGCTCGCCTCTCCCACCAGGGCCTTACCCATGGATTCTCTTCCCAAATTGCGCCACTCTAACCTCTCTCTCAACCACCACCCTTCCCCGTTTCCGGCGCCCTTATCCTCTTCCCTATCCTTCCGCTCCCTACCGCCACCCCACTCTTCCTCTTCGTCGTTTAGGTTACCTCCCATCAGAGTCTCGTCCTCCCCCCCAAACGACCCCGCGTTTCGCAACCCCAGAAACGCCCTTCTCCTCCAAACCCTAAACTCATTTCTCTCCCCCGTCGTGGAAACCACCTGCACCGTCATCGCCGCGGCGGCGTTCTTCTTCATGCGCTTCCACCACACGCCCGTCATCGCCGCCCCGCTCTCGCCGGCCGCGGCGGAGTCCTCAGTGGAGAGCGCCGAGGAAGCGGAGCGGGCCCTGGAGGAGCGACTGGGCGCGAACCCCGGGGACGCCGACGCGCTCCACGCGCTCATGGAGTGCAAGATCAGGGCGCGCAAGATGGACGAAGCGATTGGGGTTCTGGACCGTTTGATTGAGGTGGAACCGGAGGAGTGCGAGTGGCCCCTGCTGAAGGCGAACATGCACATCTACAACGACGAGCACGGGCGGGCGCGGGAGCTGTTCGAGGAAATCCTGGAGAAGGACCCGCTCCGCGTGGAAGCGTTTCACGGCCTCTTGATGGCGACCTCCGAGTCGAACGAGTCGTTGAGAGGGCTGTTGAAGAGAGTGGAAGAAGCGGTTGAGGCGTGCAGGAAGCAGAAGAGGGATTCTGACGTGAGAGACTTCAGGCTCTTGATTGCGCAGATTAAGGTGATGGAAGGGAATTTCTCTGAGGCGCTCAAGGCTTATCAGGATTTGGTGAAGGAAGAGCCCCGAGATTTTAGGCCTTACCTGTGTCAGGGCATTATATATACCCTCCTAAGGAAGAAAGACGAAGCGGAGAAGCAATTCGATAAGTTCCGCAGGCTTGTTCCCAAGGACCATCCTTATAGGGAGTACTTCGAGGACAACATGTTCGCCACCAAGTTCTTCTCGCAGAAATTGGAGAGGGAGGGGGCGGGTGCTAGGGGGTGA 1077 0.5905 MFTLTLASPTRALPMDSLPKLRHSNLSLNHHPSPFPAPLSSSLSFRSLPPPHSSSSSFRLPPIRVSSSPPNDPAFRNPRNALLLQTLNSFLSPVVETTCTVIAAAAFFFMRFHHTPVIAAPLSPAAAESSVESAEEAERALEERLGANPGDADALHALMECKIRARKMDEAIGVLDRLIEVEPEECEWPLLKANMHIYNDEHGRARELFEEILEKDPLRVEAFHGLLMATSESNESLRGLLKRVEEAVEACRKQKRDSDVRDFRLLIAQIKVMEGNFSEALKAYQDLVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFDKFRRLVPKDHPYREYFEDNMFATKFFSQKLEREGAGARG 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1099 358 Pfam Tetratricopeptide repeat 270 328 - -
Ssu4g1099 358 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 15 351 - -
Ssu4g1099 358 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 15 351 - -
Ssu4g1099 358 MobiDBLite consensus disorder prediction 53 74 - -
Ssu4g1099 358 Gene3D Tetratricopeptide repeat domain 117 342 IPR011990 GO:0005515
Ssu4g1099 358 Coils Coil 234 257 - -
Ssu4g1099 358 Pfam Tetratricopeptide repeat 134 185 - -
Ssu4g1099 358 SMART tpr_5 295 328 IPR019734 GO:0005515
Ssu4g1099 358 SMART tpr_5 261 294 IPR019734 GO:0005515
Ssu4g1099 358 SMART tpr_5 152 185 IPR019734 GO:0005515
Ssu4g1099 358 SUPERFAMILY TPR-like 128 327 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1099 Ssu-Chr4 17478300 17479376 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1099 - - gmx:100778644 483.796