Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1095 ATGCGCTCGAAAACGTGTGCAGCGATCCCTAAGGAAAGACGTGACCCTTTAAAGTCTCGACGCTTCAATCCCCTAGCAGTTGAAACAACTAGGCTGCCTGACGTGGCACAGGCCATGCGCAAGTCGACCAAAGGCCGTTACGGACCGAATAGCTACCCGATAGCCCATCCGAACAAACCGAGTTCCACACGGAGCTTCCACGAGGTGCTACAAGGACCTTTGAGCTTCAAGGAGCCTCGAGGAGGTGCTACAATGGAGTTACAACAACCTTCAAGCTTCACCTACCTTCAAGCTTCGTGGAGCTTCGACAAGGAAGAACAAAGTGAGTTTTCACTTCGCAAATGTCATAATGAGGACCAAATGAAGAAGAAGGAGCTTCGAAAATGGTGTAGAAAACAGGTTAGGAGTTTCAAAAATGGTCAAGGATGTGGCGCCACCGCCACCATCACTGTCACCGCCATCCTCGCCATTGTCGTTGATGCCAACGGCAGTGGCAGGGACGCCAgtagcaatggtggtggtggtggaggcaatgaCAATGGTGGTCGCATAAGagGCATGGTGGAGCAAAAGAAGGCGATGAGTGGTGAAGCGGAAGAAGACGGGGCACGTCGACTGGAGCACCCTGGTCGTTGGTGCGGGGCGATCATGGATCAGCACCACGTTCACACCCCTCTCTCCGAGCCCACCACCCCGAGGCCCACCCTCTTCCTCTCCACCTCCGGCAAGGCCCTTCTCCTCTCCAACTCCAACAAATCCCTCCTCCTCTCCAACTCCAACAAATCCCTGCGCCTCGACACCCCGAGGAAGAAGTATGTCAAGCAGGTCACCGGCCGCCACAACGACACCGAGCTCCACCTCGCCGCCCAGCGCGGCGACGCCGCCTCCGTCCGCCACATCCTCGACGAGATCGACTCCCACATGATGGGAGCCTTTGAGTTCGACGCCGAGGTTGCCGACATTAGGTCCGCCATCTTCAACGAGGTCAACGACCTGGGCGAAACCGCTCTCTTCACCGCCGCGGAAAAGGGCCACCTCGACGTCGTCGCGGAGCTCCTCCCTTACACCACCGACGAAGCACTCTCCTTCAAAAACCGCTCCGGCTTCGACCCCTTGCACATTTCCGCTAGCCAAGGGCATCATGCCATTGTGCAGGTGCTACTAGACCATGAGCCTGGGTTGATTAAGACGTTTTCGCAGTCGAATGCAACTCCTCTTATCTCTGCAGCTACACGAGGGCATGCAGACGTTGTTGAAGAGTTGTTGTCTCGGGATCCTACTCAGTTGGAGATATCTAGGTCCAATGGAAAGAATGCGCTCCATTTAGCTGCACGCCAGGGACATGTGGATGTTGTAAAGATACTGCTACGGAAGGATCCACAACTTGCTCGAAGGACTGATAAGAAAGGACAAACCACACTACACATGGCTGTCAAAGGGGTTAGTTGTGAAGTGGTGAGGCTGATTCTTGCTGCGGATGCAGCCATTGTTATGCTTCCCGACAAGTTTGGCAATGCAGCATTGCATGTAGCCACAAGGAAGAAGAGGGTAGAGATAGTGAATGAGCTGTTACTTCTTCCTGACACCAATGTAAATACCTTGACAAGAGACCACAAGACAGCACTGGACCTTGCGGAGGGGCTTCCAATATCTGAAGAAATTCTGGAGATCAAAGAGTGCCTGATTCGTTATGGTGCAGTTAAAGCCAATGATCTCAACCAACCAAGGGATGAGCTAAGGAAAACCATgacacaaattaagaaagatgTCTATTTTCAGCTGGAACAAACTAGAAAAACAAACAGGAATGTGAGCGGGATTGCCAATGAGCTACGCAAGTTGCACAGAGCTGGAGTCAACAACGCTGCCAACTCAGTAACGGTGGTCGCTGTGCTATTTGCAACGGTTGCATTTGCAGCACTTTTCACAGTTCCTGGTGGGGATTATGATAATGGGATGGCAGTGATGGTACACACTGTGTCTTTCAAGGCCTTCTTCATATCTAATGCCACTGCACTCTTTACATCATTGGCTGTGGTGGTGGTTCAAATCACGCTTGTTAGAGGGGAGTTAAAGGCTGAGAGGAAGGTTGTAGAGGTGATCAATAAGATGATGTGGTTAGCCTCTGTATGCACCTCTGTTTCGTTCATTACAGCATCTTATATAGTAGTTGGTCGGCGCAGTGAGTGGGCTGCAATTCTTGTTACTGTTGTAGGGGGGATCATAATGGGTGGTGTTCTTGGTACCATGACATACTATGTGGTGAAATCCAAACGCTCCCGAAGAGtgaggaagaaagagaagatcTCTAAGACAGGAACACAATCATGGCGCCTTTCCAATTCTGATGATTCAGAAGTAAACCCAATCTATGCCATTTGA 2382 0.4987 MRSKTCAAIPKERRDPLKSRRFNPLAVETTRLPDVAQAMRKSTKGRYGPNSYPIAHPNKPSSTRSFHEVLQGPLSFKEPRGGATMELQQPSSFTYLQASWSFDKEEQSEFSLRKCHNEDQMKKKELRKWCRKQVRSFKNGQGCGATATITVTAILAIVVDANGSGRDASSNGGGGGGNDNGGRIRGMVEQKKAMSGEAEEDGARRLEHPGRWCGAIMDQHHVHTPLSEPTTPRPTLFLSTSGKALLLSNSNKSLLLSNSNKSLRLDTPRKKYVKQVTGRHNDTELHLAAQRGDAASVRHILDEIDSHMMGAFEFDAEVADIRSAIFNEVNDLGETALFTAAEKGHLDVVAELLPYTTDEALSFKNRSGFDPLHISASQGHHAIVQVLLDHEPGLIKTFSQSNATPLISAATRGHADVVEELLSRDPTQLEISRSNGKNALHLAARQGHVDVVKILLRKDPQLARRTDKKGQTTLHMAVKGVSCEVVRLILAADAAIVMLPDKFGNAALHVATRKKRVEIVNELLLLPDTNVNTLTRDHKTALDLAEGLPISEEILEIKECLIRYGAVKANDLNQPRDELRKTMTQIKKDVYFQLEQTRKTNRNVSGIANELRKLHRAGVNNAANSVTVVAVLFATVAFAALFTVPGGDYDNGMAVMVHTVSFKAFFISNATALFTSLAVVVVQITLVRGELKAERKVVEVINKMMWLASVCTSVSFITASYIVVGRRSEWAAILVTVVGGIIMGGVLGTMTYYVVKSKRSRRVRKKEKISKTGTQSWRLSNSDDSEVNPIYAI 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1095 793 ProSiteProfiles Ankyrin repeat profile. 367 390 IPR002110 GO:0005515
Ssu4g1095 793 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 244 790 - -
Ssu4g1095 793 ProSiteProfiles Ankyrin repeat profile. 435 467 IPR002110 GO:0005515
Ssu4g1095 793 SMART ANK_2a 503 533 IPR002110 GO:0005515
Ssu4g1095 793 SMART ANK_2a 435 464 IPR002110 GO:0005515
Ssu4g1095 793 SMART ANK_2a 332 361 IPR002110 GO:0005515
Ssu4g1095 793 SMART ANK_2a 280 309 IPR002110 GO:0005515
Ssu4g1095 793 SMART ANK_2a 401 431 IPR002110 GO:0005515
Ssu4g1095 793 SMART ANK_2a 367 396 IPR002110 GO:0005515
Ssu4g1095 793 SMART ANK_2a 469 498 IPR002110 GO:0005515
Ssu4g1095 793 Pfam Domain of unknown function 619 723 IPR026961 -
Ssu4g1095 793 Gene3D - 393 497 IPR036770 -
Ssu4g1095 793 ProSiteProfiles Ankyrin repeat region circular profile. 435 458 - -
Ssu4g1095 793 MobiDBLite consensus disorder prediction 41 64 - -
Ssu4g1095 793 Gene3D - 249 392 IPR036770 -
Ssu4g1095 793 MobiDBLite consensus disorder prediction 164 184 - -
Ssu4g1095 793 PANTHER CASKIN 244 790 - -
Ssu4g1095 793 Pfam Ankyrin repeats (3 copies) 285 390 IPR002110 GO:0005515
Ssu4g1095 793 Pfam Ankyrin repeats (3 copies) 401 460 IPR002110 GO:0005515
Ssu4g1095 793 Pfam Ankyrin repeats (3 copies) 467 532 IPR002110 GO:0005515
Ssu4g1095 793 ProSiteProfiles Ankyrin repeat region circular profile. 367 390 - -
Ssu4g1095 793 Gene3D - 498 599 IPR036770 -
Ssu4g1095 793 SUPERFAMILY Ankyrin repeat 285 565 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1095 Ssu-Chr4 17376128 17403251 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1095 226 793 Miscellaneous Gene Families AT3G09550 73.785 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1095 - - gmx:100779710 911.753