Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1084 ATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTCTATGTGGGACACTTGTCTTCGAGGACCCGTTCCCGTGATCTGGAGCGAGTCTTCAGCAGATACGGAAGAGTTCGAGGTGTGGATATGAAGCATGATTTCGCCTTTGTTGATTTTAGTGATCCCCGAGATGCTGATGATGCAAGATATAACTTGGATGGTCGGGACGTTGATGGAAGTCGTATTATTGTGGAATTTGCAAAAGGGGCTCCTCGTGGTTCCCGGGAATATTTGGGGCGAGGTCCTCCTCCTGGCTCTGGACGCTGCTTTAATTGTGGCCTTGATGGCCATTGGGCCCGAGATTGCAAAGCTGGGGATTGGAAGAATAAGTGTTACCGCTGTGGGGAGAGAGGTCATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGTAGACGTGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCGTCGTGGCAGAAGCCGTGATCGAAGTTACAGCCGAGATCGCAGCTACAGTCGATCACGATCCCCTGTCAGAAGAGAAGAAAGCCCTGTTCGTGAAGATAGATCTCTAAGCCCTGAGCCCAAAAATAGTCCTCAGCCCTTCAAGACAAGGAAGCATAGTCCATCACCTGACCAAAGTAGCCCACCGAATAGAGGTGACACATCTCCCGGTAATGATAGGTTGAGTAGAAGCCCTGCAAGGGACCGCGAAGATAGAGGCTATGACAGCCCTAAAGTTAATGGTCGTGGCGGCAGCCCTAGCCGCAGCCCCAGGGATGACGACAGGAGCCCCATTGACGATGATGACAACCACCGCCACTCGCCAAGAGGCAGTGAGTCACCTTAA 864 0.5139 MPRYDDKYGNTRLYVGHLSSRTRSRDLERVFSRYGRVRGVDMKHDFAFVDFSDPRDADDARYNLDGRDVDGSRIIVEFAKGAPRGSREYLGRGPPPGSGRCFNCGLDGHWARDCKAGDWKNKCYRCGERGHIERNCKNSPKKLSRRGRSYSRSPVRSRSPRRGRSRDRSYSRDRSYSRSRSPVRREESPVREDRSLSPEPKNSPQPFKTRKHSPSPDQSSPPNRGDTSPGNDRLSRSPARDREDRGYDSPKVNGRGGSPSRSPRDDDRSPIDDDDNHRHSPRGSESP 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1084 287 MobiDBLite consensus disorder prediction 235 250 - -
Ssu4g1084 287 MobiDBLite consensus disorder prediction 134 287 - -
Ssu4g1084 287 SUPERFAMILY RNA-binding domain, RBD 7 100 IPR035979 GO:0003676
Ssu4g1084 287 MobiDBLite consensus disorder prediction 141 163 - -
Ssu4g1084 287 SMART rrm1_1 12 77 IPR000504 GO:0003723
Ssu4g1084 287 MobiDBLite consensus disorder prediction 164 198 - -
Ssu4g1084 287 MobiDBLite consensus disorder prediction 260 287 - -
Ssu4g1084 287 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Ssu4g1084 287 Pfam Zinc knuckle 121 138 IPR001878 GO:0003676|GO:0008270
Ssu4g1084 287 SUPERFAMILY Retrovirus zinc finger-like domains 91 139 IPR036875 GO:0003676|GO:0008270
Ssu4g1084 287 ProSiteProfiles Zinc finger CCHC-type profile. 122 138 IPR001878 GO:0003676|GO:0008270
Ssu4g1084 287 ProSiteProfiles Zinc finger CCHC-type profile. 100 115 IPR001878 GO:0003676|GO:0008270
Ssu4g1084 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Ssu4g1084 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Ssu4g1084 287 Gene3D - 3 89 IPR012677 -
Ssu4g1084 287 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33 6 282 - -
Ssu4g1084 287 MobiDBLite consensus disorder prediction 199 234 - -
Ssu4g1084 287 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 6 282 - -
Ssu4g1084 287 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Ssu4g1084 287 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Ssu4g1084 287 Gene3D - 91 119 - -
Ssu4g1084 287 Gene3D - 120 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1084 Ssu-Chr4 17200422 17204481 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1084 K12896 - gmx:100812698 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1084 4 17200422 17204481 Ssu4g1084 4 17200422 17204481 ECH