Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1083 ATGCCTCGCCATGATGATAAATATGGTAATACCCGCCTCTATGTTGGACGCTTGTCTTCGAGGACTCGTTCCCGCGATCTGGAGCGTGTATTCAGCAGATATGGAAGAGTTCGAGGTGTGGATATGAAGCATGATTTCGCCTTTGTTGAATTTAGCGATCCTCGAGATGCTGATGATGCTAGATATAACTTAGATGGCCGTGACGTTGAAGGAAGTCGTATTATTGTTGAATTTGCCAAGGGGGGTCCTCGTGGTTCCCGGGAATACTTGGGTCGGGGTCCACCTCCTGGATCTGGACGATGCTTTAACTGTGGCATTGATGGTCATTGGGCCCGAGATTGCAAGGCTGGGGATTGGAAGAATAAGTGTTACCGCTGTGGGGAAAGAGGTCATATAGAAAAGAATTGCAAGAACAGTCCCAAAAAGTCGAGCAGCAGACGTGGACGGAGTCTTTCACGTTCACCGGTCAGGTCACGTTCTCCTCGTCGTGCCAGAAGCCGGGATCGAAGCTACAGTCGAGACCGCAGCTACAGCCGATCAAGATCTCCTGTCAGAAGAGAACGGAGCCCAGTTTCTGAGGATAGATCACGGAGTCCTGAGTCCTCTAAGAGGAAGCATAGTGCATCACCTGACCAAAGCAGCCCACAGAGGAGAGGTGACGCATCTCCTGGTAATGATAGGTTGGTCACTCAGCAAGATGGATCTGACTACAGTGATGGTCCTACAGGGAAAAGTAGAAGCCCTGCTAGCCCTGCAAGGGACCGTGATGAGAGTGGCTATGATAGCCCTAAAGCTAATGGCCGCAGCCGCAGCCAGAGCCCTAGGGATGATGACAGGAGCCccattgatgaagatgatgacaaCCACCGCCACTCACAGTCACCTTAA 888 0.5034 MPRHDDKYGNTRLYVGRLSSRTRSRDLERVFSRYGRVRGVDMKHDFAFVEFSDPRDADDARYNLDGRDVEGSRIIVEFAKGGPRGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKSSSRRGRSLSRSPVRSRSPRRARSRDRSYSRDRSYSRSRSPVRRERSPVSEDRSRSPESSKRKHSASPDQSSPQRRGDASPGNDRLVTQQDGSDYSDGPTGKSRSPASPARDRDESGYDSPKANGRSRSQSPRDDDRSPIDEDDDNHRHSQSP 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1083 295 Gene3D - 2 89 IPR012677 -
Ssu4g1083 295 MobiDBLite consensus disorder prediction 165 211 - -
Ssu4g1083 295 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 6 280 - -
Ssu4g1083 295 SUPERFAMILY RNA-binding domain, RBD 5 100 IPR035979 GO:0003676
Ssu4g1083 295 ProSiteProfiles Zinc finger CCHC-type profile. 122 138 IPR001878 GO:0003676|GO:0008270
Ssu4g1083 295 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33 6 280 - -
Ssu4g1083 295 ProSiteProfiles Zinc finger CCHC-type profile. 100 115 IPR001878 GO:0003676|GO:0008270
Ssu4g1083 295 Gene3D - 120 166 - -
Ssu4g1083 295 Gene3D - 91 119 - -
Ssu4g1083 295 SMART rrm1_1 12 77 IPR000504 GO:0003723
Ssu4g1083 295 MobiDBLite consensus disorder prediction 134 295 - -
Ssu4g1083 295 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Ssu4g1083 295 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Ssu4g1083 295 MobiDBLite consensus disorder prediction 270 295 - -
Ssu4g1083 295 MobiDBLite consensus disorder prediction 141 164 - -
Ssu4g1083 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Ssu4g1083 295 SUPERFAMILY Retrovirus zinc finger-like domains 91 139 IPR036875 GO:0003676|GO:0008270
Ssu4g1083 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Ssu4g1083 295 Pfam Zinc knuckle 121 138 IPR001878 GO:0003676|GO:0008270
Ssu4g1083 295 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Ssu4g1083 295 MobiDBLite consensus disorder prediction 249 263 - -
Ssu4g1083 295 MobiDBLite consensus disorder prediction 212 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1083 Ssu-Chr4 17190598 17193453 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1083 K12896 - gmx:100813237 461.84