Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1064 atgagAGATTTCGTGATCCTTGGCTCCTCCGTCGGAActccttttccttcttctccAGCAGCACCCCATCAACATCGCCACCCAATCAAACCCCACCAGCCTTCTCTTCCAAAGCTCGCTCCCTTCTCTTCCCCTTCCACTTGGAACATTTCCTGCGCCCTCCAAGCCCCCTTGGCTCTCAACCACTATGCTGATTCCAAGCTTGTGCAGGAATTTGAAACGGTCATTGAGGACGTGCTTGATTCCGGGGTCGACGCTGAGCTTCTGGCCAAGGTGGTTCTGTTGGGAATTCGAGGGAAGAAGGTTCGGACTGTGATTCACGCCCTCAACAAAGTGCAGGGTCCCGGAATTCCCTTATCTACTCATCTTCATGGCTCTGCCATGGATATCATTGCAAAGGAGTGTTGCCGAATGGTCACGTGCGGCCACATCGAGGATGCTGTCGAACTCATGGAGGTTCTCGCACGTTTCCAGGTATCAATCAGGGAACTTGTCCAGCCGTCTGACATAATTAAACGATGTGCTCTTAGTCGGAACCCAATTTTAGCTGTGagGTATGCATGTCTTCTTCCCCATGCACATATATTGTTCTGCAATATTATATCTGAATTTGGCAAAAGGAGGGATTTAGTTTCTGCTCTGAAAGCGTATGAGGCATCGAAGAAAAACCTGAACACTcccaatatgtacatatacCGGGCAACAATTGACGCTTGTGGTCTATGTGGTGATTACATGAAATCTAGGTACATATATGAGGATTTGCTTAATCAGAAGATCACTCCAAATATATACGTGTTCAACAGTCTCATGAATGTGAATGCCCATGATCTTAGCTACACGTTAAATCTATATCAAAATATGCAGAATCTTGGTTTAAAACCAGATATGACATCTTATAACATCCTACTGAAAGCATGCTGTGTTGCTGGAAGAGTTGATCTGGCTCAAGACATTTATAGGGATCTTAAGCATTTGGAATCAGTGGGACAGCTAAAATTAGATGTCTTTACCTACAGCACAATTATAAAGGTCTTTGCAGATGTGAAATTGTGGCAGATGGCTCTAAAAATCAAGCAAGACATGCTGTCTGCTGGTGTTTCTCTTAATACTGTTGCATGGTCATCATTAATCAATGCCTGCGCACATGCAGGGCTTGTAGAGCAGGCAATTCAGTTATTTGAAGAAATGCTTTTGGCTGGCTGTGAACCTAATACACAGTGTTTCAACATCATTTTAAATGCATGTGTTGAAGTTTGCCAATATGACAGGGCTTTTCGCTTTTTCCATTCTTGGAAGGGAAAAAAGATGTTGGGGACATTTGGTGAAGGCTACAATAGCAATATAGGGCAGGGACGCATGCATAATGTTACTACTGTGCCAAATGGCATTTCTAATTCACACATCTTGAGTTTTGCGGAGAGGTTCCCTTTCACACCAACTACAACaacatacaatattttattgaagGCCTGTGGTACTGATTACTACCATGCAAAGGCGTTAATCAAAGAGATGAAAACAGTAGGTCTTTCCCCTAATCAAATAAGCTGGTCAATTTTGATAGATATATGTGGAGCAACAGCAAATGTGGAGGGTGCCATTGagATTTTGAAAACCATGGGTGATGCTGGAATTAAACCTGATGTTATTGCATATACAACAGCCATCAAGGTTTGTGTTGAAAGTAAGAATTTTAAGCAAGCATTAACATTATACGAAGAAATGAAAAGCTATGAGATACATCCAAATTGGGTGACATATAACACACTTCTGAAGGCACGCAGTAAATACGGCTCCCTACATGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCAGGGTACGAACCCAATGACTACTATCTGGAAGAACTGATTGAGGAATGGTGTGAAGGAGTGATACAAGATAATAGAGAGAACCAAGGAGAATTTTCTTCCAGCAGTAAATCTGAATTAGAGAGACCCCAAAGTTTTCTTCTTGAAAAAATTGCAGCACATCTGCTAAAGAGGGTAGCTGACATCCTAGCAATTGATGTTCAAGGGCTCACAAAGGTTGAAGCTCGATTGGTTGTTCTTGCAGTTCTTCGAATGGTCAAAGAGAATTACGGTTTAGGACATTCAGTAAATGATGACATCTTGATCATCATAGGAGCTACTAAAGCGGACGAAAATCCAGCCAAAAACATATCAGAAGTACAAGAGACAATACTAAAACTTCTTAGGAATGAGTTGGGGCTTGAAGTTCTTCCAGCCAGAACCAGATTAGCACCAAGTGAAACTGCAAAGTTAGAGTACCCCAACCTTTCAAATCTCAGCATAGAAGCAGTACCAGGAGACAATGCATTACCCACAACAATGGGGTTTCAGACAAGGAGACCTGCAGTTTTAGTGAGGTTGAAGGTCACCAAAAAATCATTATACAGTTGGTTGCACAGGAAGATCACAAGCAAGGTTAAGAGAAACTAG 2478 0.414 MRDFVILGSSVGTPFPSSPAAPHQHRHPIKPHQPSLPKLAPFSSPSTWNISCALQAPLALNHYADSKLVQEFETVIEDVLDSGVDAELLAKVVLLGIRGKKVRTVIHALNKVQGPGIPLSTHLHGSAMDIIAKECCRMVTCGHIEDAVELMEVLARFQVSIRELVQPSDIIKRCALSRNPILAVRYACLLPHAHILFCNIISEFGKRRDLVSALKAYEASKKNLNTPNMYIYRATIDACGLCGDYMKSRYIYEDLLNQKITPNIYVFNSLMNVNAHDLSYTLNLYQNMQNLGLKPDMTSYNILLKACCVAGRVDLAQDIYRDLKHLESVGQLKLDVFTYSTIIKVFADVKLWQMALKIKQDMLSAGVSLNTVAWSSLINACAHAGLVEQAIQLFEEMLLAGCEPNTQCFNIILNACVEVCQYDRAFRFFHSWKGKKMLGTFGEGYNSNIGQGRMHNVTTVPNGISNSHILSFAERFPFTPTTTTYNILLKACGTDYYHAKALIKEMKTVGLSPNQISWSILIDICGATANVEGAIEILKTMGDAGIKPDVIAYTTAIKVCVESKNFKQALTLYEEMKSYEIHPNWVTYNTLLKARSKYGSLHEVQQCLAIYQDMRKAGYEPNDYYLEELIEEWCEGVIQDNRENQGEFSSSSKSELERPQSFLLEKIAAHLLKRVADILAIDVQGLTKVEARLVVLAVLRMVKENYGLGHSVNDDILIIIGATKADENPAKNISEVQETILKLLRNELGLEVLPARTRLAPSETAKLEYPNLSNLSIEAVPGDNALPTTMGFQTRRPAVLVRLKVTKKSLYSWLHRKITSKVKRN 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1064 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 326 IPR002885 -
Ssu4g1064 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Ssu4g1064 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 549 583 IPR002885 -
Ssu4g1064 825 Pfam PPR repeat 337 367 IPR002885 -
Ssu4g1064 825 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 51 812 - -
Ssu4g1064 825 PANTHER OS03G0284900 PROTEIN 51 812 - -
Ssu4g1064 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 514 548 IPR002885 -
Ssu4g1064 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Ssu4g1064 825 Pfam Pentacotripeptide-repeat region of PRORP 205 324 IPR033443 -
Ssu4g1064 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 584 621 IPR002885 -
Ssu4g1064 825 Pfam Pentatricopeptide repeat domain 537 594 IPR002885 -
Ssu4g1064 825 Pfam Pentatricopeptide repeat domain 484 526 IPR002885 -
Ssu4g1064 825 TIGRFAM PPR: pentatricopeptide repeat domain 299 324 IPR002885 -
Ssu4g1064 825 TIGRFAM PPR: pentatricopeptide repeat domain 372 406 IPR002885 -
Ssu4g1064 825 TIGRFAM PPR: pentatricopeptide repeat domain 552 585 IPR002885 -
Ssu4g1064 825 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Ssu4g1064 825 TIGRFAM PPR: pentatricopeptide repeat domain 516 550 IPR002885 -
Ssu4g1064 825 Gene3D Tetratricopeptide repeat domain 327 459 IPR011990 GO:0005515
Ssu4g1064 825 Gene3D Tetratricopeptide repeat domain 468 663 IPR011990 GO:0005515
Ssu4g1064 825 Gene3D Tetratricopeptide repeat domain 195 326 IPR011990 GO:0005515
Ssu4g1064 825 Pfam PPR repeat family 370 417 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1064 191 747 Glycosyltransferase AT1G05670 19.761 5.34e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1064 - - gmx:100794606 1446.03