Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1042 atggactacctaataatttcttcccAGACACACCCCATCTACTCGATTGCGTTTCACAACAAGAAGCCAGCAGCACACCAAACTCACTCtctcaaacacacacacacacacactttcgGGGAAGCATTAGCATTAGCAAAAACCATGAAGCTGTCCGCGAAACCCATTTCGAGTCCGGGCCGGACAGACAAGTTCCCTCCCCCACTGATGAGGTTCCTGAGGAGCAATGCGGGGAGCAGAAGCAGAAGGTCGAGGTCGAGCCCCATGTTTGTGCGGAAGAAAAACAACGCCACCATCGAAACCCAGGAACCCTCTTCCCCCAAGGTCACGTGCATGGGGCAAGTGCGAGTTAGACGCGCTTCCAAACAAGCCTCCACCAAACGCGAGAAAGCCCCGACGCGGCGCGGCTGCTGGTGGATCCGAAAGCCCAAGCCGTGCCGCTGCCGACCCCTCTGGCCCAACTGGCCCTTCTTCCGACGAAAGCCCACCAAGCCGAAACAAGACTCGGAGTCCAACTTCCACGGCGAGTCCAACTACGACGACGAAGAATCGGTGTTCCAAGAGAGAGCGAATGTGGATAATGGTTTTGGTTCCAATTCCAACTCTTGCACGCCCCCGAGCAACGCTTTGCTTTTGACTCGCTGTAGATCCGCGCCGTACAGATCCTCGTCTTTGGCTAGTAGGTTCTGGGGCTCCCCCACAGAACCGGAGTTGCCAAACGCAGAGTCCACTTCCGAGGAACCCACTTCGGATCAGGCAGAGAAAAGGGACCCCCAAACGGAACCTAAGCTCGAGGACCTCGAGGATTCGCTCAGAGAAAAAATCGCTTCACTCACCAAACCAGAGGAATTATCTAATGGAAGGCAAGTTGAAATTGAAACAGACTCTGCGTCGCGTCCTACTGTACTCACTAGGTGCAAATCGGAACCGGCGAGAACCGGACACCGACTTGACCCTCTGGTAAATAATTTGTGGAAAAAGAGAAGGTTGGAATTTGATTAA 1002 0.514 MDYLIISSQTHPIYSIAFHNKKPAAHQTHSLKHTHTHTFGEALALAKTMKLSAKPISSPGRTDKFPPPLMRFLRSNAGSRSRRSRSSPMFVRKKNNATIETQEPSSPKVTCMGQVRVRRASKQASTKREKAPTRRGCWWIRKPKPCRCRPLWPNWPFFRRKPTKPKQDSESNFHGESNYDDEESVFQERANVDNGFGSNSNSCTPPSNALLLTRCRSAPYRSSSLASRFWGSPTEPELPNAESTSEEPTSDQAEKRDPQTEPKLEDLEDSLREKIASLTKPEELSNGRQVEIETDSASRPTVLTRCKSEPARTGHRLDPLVNNLWKKRRLEFD 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1042 333 MobiDBLite consensus disorder prediction 226 298 - -
Ssu4g1042 333 PANTHER CHLOROPLAST PROTEIN HCF243-RELATED 49 331 - -
Ssu4g1042 333 MobiDBLite consensus disorder prediction 159 183 - -
Ssu4g1042 333 MobiDBLite consensus disorder prediction 54 108 - -
Ssu4g1042 333 MobiDBLite consensus disorder prediction 248 279 - -
Ssu4g1042 333 MobiDBLite consensus disorder prediction 161 183 - -
Ssu4g1042 333 MobiDBLite consensus disorder prediction 77 108 - -
Ssu4g1042 333 PANTHER PROTAMINE P1 FAMILY PROTEIN 49 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1042 Ssu-Chr4 16707020 16708021 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1042 - - gmx:102668573 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1042 4 16707020 16708021 Ssu4g1042 4 16707020 16708021 ECH
Ssu4g1042 4 16707020 16708021 Ssu7g2385 7 46606166 46606735 PCT