Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu4g1040 | ATGGCTTCTTCTCGGCTGGATTTCTTGTTCTGTCATTTGTGTGGGACATTGCTCACTGTCCCTTCCACCGAGTACGCACAATGCCCCTTGTGCAAAACTCGCAGGGACATACAAGATATTCGTGATAAGGAAATAAGTTACACAATTTATGCTGAGGATATCAGAAGAGAGCTTGGAATGGAAATAATCGAGGAACAGAAGGTGCAATTGTCTAAGGTCAACAAGAAGTGTGAAAAATGTGGCCATGATGAAGCTAACTTTTATACCAGACAGATGAGATCAGCGGATGAAGGGCAAACTACTTTCTACACATGTACCCGCTGTGGTCATCAATCTCAGGAGAATTAG | 348 | 0.431 | MASSRLDFLFCHLCGTLLTVPSTEYAQCPLCKTRRDIQDIRDKEISYTIYAEDIRRELGMEIIEEQKVQLSKVNKKCEKCGHDEANFYTRQMRSADEGQTTFYTCTRCGHQSQEN | 115 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu4g1040 | 115 | PANTHER | DNA-DIRECTED RNA POLYMERASE | 3 | 115 | IPR012164 | GO:0006351 | |
| Ssu4g1040 | 115 | Pfam | Transcription factor S-II (TFIIS) | 76 | 111 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
| Ssu4g1040 | 115 | ProSiteProfiles | Zinc finger TFIIS-type profile. | 73 | 113 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
| Ssu4g1040 | 115 | PIRSF | RNApol_RpoM | 8 | 115 | IPR012164 | GO:0006351 | |
| Ssu4g1040 | 115 | PANTHER | DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12 | 3 | 115 | - | - | |
| Ssu4g1040 | 115 | Gene3D | - | 61 | 114 | - | - | |
| Ssu4g1040 | 115 | SUPERFAMILY | Zinc beta-ribbon | 64 | 114 | - | - | |
| Ssu4g1040 | 115 | SMART | Cys4_2 | 75 | 114 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
| Ssu4g1040 | 115 | CDD | Zn-ribbon_RPA12 | 72 | 115 | IPR034004 | GO:0006379 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu4g1040 | K03000 | - | gmx:100527489 | 206.453 |