Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1030 ATGGCAAAGTTTTTCCATTTCCTCCCTCTCCtcttcctcatccaaacaattTCAGCCCAAGTAGCTCCAGCACCAGCAGGACCCACCAACATCACCCAAGTCCTAGAGAAGGCAGGCCAATTCACAACCTTCATCAAACTTCTCAAAGCCTCCCAAGTAGCCGACCGAATCAATTCACAGCTCAACAACTCCAACCAAGGCCTAACCATCTTTGCACCCACAGATAATGCCTTCTCAAGCCTAAAAGCAGGGACACTAAACTCCATAAACTCACAAGACCAACTACAGTTGGTGCAGTTCCACATACTCCCCTCTCTCTATACCACGTCACAGTTCCAAACTGCAAGTAACCCCTTGCACACACAGGCCGGGAACAGTGACGACGGCGAGTACCCTCTAAATGTCACCACCTCAGGGAACCAAGTGAATGTGACTACTGGGGTGGTCGATACAACAGTGTCCAACACTATATACAGTGATAACCAGCTTGCAGTGTATCAGGTGGACAAGGTGCTTCTTCCTATGGCACTTTTTGGTGCGCCGCCAACGGCCGCACCGGCGGAGGCTCCGGGGCCGACCAAGCCGGAGAAAAATGTCCGGTCAGCTGATGCTCCGACAAGGTCCTCGGACACGTCAGTTGATGCTTCGAGTGCGGTGAGTTTGAATTGGAAGACAGCCTTCGTTGTTGCAGTTATTGCCGGGGTTGTTTCTTGTTTCTGA 720 0.5014 MAKFFHFLPLLFLIQTISAQVAPAPAGPTNITQVLEKAGQFTTFIKLLKASQVADRINSQLNNSNQGLTIFAPTDNAFSSLKAGTLNSINSQDQLQLVQFHILPSLYTTSQFQTASNPLHTQAGNSDDGEYPLNVTTSGNQVNVTTGVVDTTVSNTIYSDNQLAVYQVDKVLLPMALFGAPPTAAPAEAPGPTKPEKNVRSADAPTRSSDTSVDASSAVSLNWKTAFVVAVIAGVVSCF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1030 239 SMART fasc_3 69 175 IPR000782 -
Ssu4g1030 239 Gene3D FAS1 domain 14 175 IPR036378 -
Ssu4g1030 239 MobiDBLite consensus disorder prediction 184 215 - -
Ssu4g1030 239 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 7 236 IPR045003 -
Ssu4g1030 239 Pfam Fasciclin domain 40 174 IPR000782 -
Ssu4g1030 239 ProSiteProfiles FAS1/BIgH3 domain profile. 28 172 IPR000782 -
Ssu4g1030 239 SUPERFAMILY FAS1 domain 27 174 IPR036378 -
Ssu4g1030 239 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 11 7 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1030 Ssu-Chr4 16545470 16546189 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1030 - - gmx:100805219 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1030 4 16545470 16546189 Ssu4g1030 4 16545470 16546189 ECH