Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1028 ATGATGAACACAGCGAACGGCATGATGTCACCGTCGTCTTCATCGGGAACGGCACAGTCTCCGGGACTTAAGACCTATTTCAAAACCCCCGAGGGTCGATATAAGCTTCAATACGAGAAAACTCACCCTTCCGGTCTTCTTCATTACGCCCACGGCAAAACCGTTACTCAGGTAACCCTCGCACATCTGAAGGACAAGCCTGCACCTTCTACCCCGACCGCATCGTCTTCAAGTTTCAGTGCCAGCAGTGGGGTACGGTCGGCAGCAGCTAGATTGTTGGGAGGAAGCAATGGAAGCCGGGCACTTAGTTTTGTTGGAGGCAACGGTGGAAGCAAGAGTAATGGAGGAAATAGTAGGATTGGTTCCATTGGTGCCTCGAGTACAACTAGTTCAATGGCTAATCCAAATTTTGATGGGAAAGGAACGTACTTGATCTTCAATGTTGGGGATGCAATTTTCATTAGTGATTTGAATTCTCAAGACAAGGACCCCATAAAGTCTATTCACTTCAGTAACTCGAATCCTGTGTGCCACGCATTTGATCAGGATGCTAAGGATGGGCATGATTTGCTCATTGGTTTGAGCTCTGGTGATGTTTACTCAGTGTCACTGAGACAGCAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTACAACAAAGATGGTTCTGTCAATAACAGTCGTTGTACTGGTATTGCTTGGGTGCCTGGAGGTGATGGTGCTTTTGTTGTTTCTCATGCTGATgggaatttatatgtatatgaaaagAACAAAGATGGTGCTGGTGATTCTTCTTTCCCAGTTGTAAAAGATCCAACTCAATTTTCTGTTGCCCATGCACGTTACAGTAAGAGCAATCCAATCGCTAGATGGCATATATGCCAGGGTTCAATTAACAGTATTTCTTTCTCAATGGATGGGGCATGCTTAGCAACTGTTGGACGAGACGGTTATTTGCGAGTGTTTGATTACTCAAAAGAACAACTTATATGTGGTGGAAAAAGTTATTATGGTGCTTTGTTATGCTGTGCTTGGAGCATGGatggaaaatatattttgacGGGAGGGGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACATAACTCATGGGTCAGTGGAGTTGCTTTCGATTCGTATTGGTCATCACCAAATTCGAATGACAATGGAGAGACTATTATGTATCGTTTTGGTTCTGTTGGTCAGGATACACAATTGCTTCTATGGGACCTGGAAATGGATGAGATTGTAGTGCCCTTGAGGCGTCCACCTGGTGGATCCCCGACTTACAGTACTGGAAGCCAGTCATCCCACTGGGACAGTGTTGTCCCATTGGGTACCTTGCAACCTGCTCCGAGTATGCGGGATGTTCCAAAAATCTCTCCATTGGTTGCTCACCGTGTGCATACTGAGCCACTCTCTGGCTTGATATTTACCCAGGAATCTGTGCTTACTGCCTGCCGGGAGGGGCACATTAAAATCTGGATGAGGCCCGGGGTTGCTGAGAGCCAATCAAGCAACTCCGAAAACTTGTTAGCTGCCAGTCTCAAGGAGAAGCCTTCACTTTCAAGCAGGATCAGCAATTCTAGCTACAAACAATGA 1641 0.4534 MMNTANGMMSPSSSSGTAQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVTQVTLAHLKDKPAPSTPTASSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGGSKSNGGNSRIGSIGASSTTSSMANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLSSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCTGIAWVPGGDGAFVVSHADGNLYVYEKNKDGAGDSSFPVVKDPTQFSVAHARYSKSNPIARWHICQGSINSISFSMDGACLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTYSTGSQSSHWDSVVPLGTLQPAPSMRDVPKISPLVAHRVHTEPLSGLIFTQESVLTACREGHIKIWMRPGVAESQSSNSENLLAASLKEKPSLSSRISNSSYKQ 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1028 546 MobiDBLite consensus disorder prediction 1 24 - -
Ssu4g1028 546 MobiDBLite consensus disorder prediction 518 546 - -
Ssu4g1028 546 ProSiteProfiles Trp-Asp (WD) repeats profile. 336 377 IPR001680 GO:0005515
Ssu4g1028 546 MobiDBLite consensus disorder prediction 107 132 - -
Ssu4g1028 546 SUPERFAMILY WD40 repeat-like 150 508 IPR036322 GO:0005515
Ssu4g1028 546 MobiDBLite consensus disorder prediction 1 26 - -
Ssu4g1028 546 Gene3D - 12 518 IPR015943 GO:0005515
Ssu4g1028 546 PANTHER LOW QUALITY PROTEIN: WD REPEAT-CONTAINING PROTEIN 20-LIKE 3 543 - -
Ssu4g1028 546 PANTHER WD REPEAT PROTEIN 3 543 - -
Ssu4g1028 546 Pfam WD domain, G-beta repeat 298 326 IPR001680 GO:0005515
Ssu4g1028 546 Pfam WD domain, G-beta repeat 343 368 IPR001680 GO:0005515
Ssu4g1028 546 SMART WD40_4 287 326 IPR001680 GO:0005515
Ssu4g1028 546 SMART WD40_4 329 368 IPR001680 GO:0005515
Ssu4g1028 546 SMART WD40_4 371 423 IPR001680 GO:0005515
Ssu4g1028 546 SMART WD40_4 472 509 IPR001680 GO:0005515
Ssu4g1028 546 SMART WD40_4 212 258 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1028 Ssu-Chr4 16528323 16534438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1028 303 430 Miscellaneous Gene Families AT5G08390 22.656 2.05e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1028 K24741 - gmx:100782580 983.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1028 4 16528323 16534438 Ssu4g1028 4 16528323 16534438 ECH