Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1019 ATGGAATCTGCCGAGAGAAGGCCTTTCTATTTGTACAGCAAGCCCCAGATAACTAGGAATGTTGAAGCCTACAGGGATGCATTGGAAGGGTTGAACTCTACAATTGGTTATGCCATTAAGGCCAACAATAACTTGAAGATTCTGGAACATTTGAGGCACTTGGGTTGTGGTGCTGTGCTTGTCAGTGGGAATGAGCTTAGATTGGCTCGTCGTGCTGGCTTTGATCCCACAAGGTGTATCTTTAATGGGAATGGGAAAATCTTGGAGGATTTGGTCTTGGCTGCCCAGGAAGGCGTGTTTGTCAACATTGATAGTGAATTTGACCTGGAAAATATTGTAGCTGCTGCGAGAATTGCTGAAAAGAGGGTCAATGTTTTACTTCGGATTAATCCTGATGTAGATCCACAGGTCCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATTAGAAATGAGAAGCTGCAGTGGTTTTTAGATGCAGTGAAGGAGCATCGTAATGAGCTCAAACTTGTAGGGGCCCACTGTCATCTTGGTTCAACAATTACCAAGGTAGACATTTTCAGGGATGCAGCCACTATTATGATAAACTACATTGACCAAATCCGAGCTCAGGGTTTCgaagttgattatttaaatattggTGGAGGACTTGGGATAGATTATTATCATTCTGGTGCCGTCCTTCCTACACCTAGAGATCTCATTGACACTGTGCGGGATCTTGTTCTTTCGCGTGATCTTAATCTCATCATTGAACCAGGGAGATCACTCATTGCAAACACGTGTTGCTTAGTTAACCGAGTGACAGGTGTTAAAACTAATGGATCTAAAAACTTCATTGTAATTGATGGAAGTATGGCTGAACTTATCCGCCCTAGTCTTTATGATGCTTACCAGCATATAGAGCTGGTTTCCCCTACCCCATCAAATGCTGAGAAGCAAATCTTTGATGTAGTTGGCCCTGTCTGTGAGTCTGCAGATTTCTTAGGAAAAGGAAGGGAACTTCCTACTCCAGCCaagGGTACTGGTTTGGTTGTTCATGATGCTGGTGCTTATTGCATGAGTATGGCATCAACTTACAATTTAAAGATGCGACCTCCCGAGTATTGGgttgaagaTGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAGACCACATTCGGTTTTTTGAGGGCCTTTGA 1200 0.4217 MESAERRPFYLYSKPQITRNVEAYRDALEGLNSTIGYAIKANNNLKILEHLRHLGCGAVLVSGNELRLARRAGFDPTRCIFNGNGKILEDLVLAAQEGVFVNIDSEFDLENIVAAARIAEKRVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKEHRNELKLVGAHCHLGSTITKVDIFRDAATIMINYIDQIRAQGFEVDYLNIGGGLGIDYYHSGAVLPTPRDLIDTVRDLVLSRDLNLIIEPGRSLIANTCCLVNRVTGVKTNGSKNFIVIDGSMAELIRPSLYDAYQHIELVSPTPSNAEKQIFDVVGPVCESADFLGKGRELPTPAKGTGLVVHDAGAYCMSMASTYNLKMRPPEYWVEDDGSVSKIRHGETFEDHIRFFEGL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1019 399 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 16 262 IPR022644 GO:0003824
Ssu4g1019 399 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 57 69 IPR000183 GO:0003824
Ssu4g1019 399 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 37 55 IPR000183 GO:0003824
Ssu4g1019 399 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 252 271 IPR000183 GO:0003824
Ssu4g1019 399 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 170 183 IPR000183 GO:0003824
Ssu4g1019 399 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 353 366 IPR000183 GO:0003824
Ssu4g1019 399 CDD PLPDE_III_DapDC 8 374 IPR002986 GO:0008836|GO:0009089
Ssu4g1019 399 TIGRFAM lysA: diaminopimelate decarboxylase 8 393 IPR002986 GO:0008836|GO:0009089
Ssu4g1019 399 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 37 55 IPR022653 -
Ssu4g1019 399 Gene3D Alanine racemase 14 259 IPR029066 -
Ssu4g1019 399 SUPERFAMILY Alanine racemase C-terminal domain-like 238 394 IPR009006 GO:0003824
Ssu4g1019 399 PRINTS Diaminopimelate decarboxylase signature 143 152 IPR002986 GO:0008836|GO:0009089
Ssu4g1019 399 PRINTS Diaminopimelate decarboxylase signature 280 298 IPR002986 GO:0008836|GO:0009089
Ssu4g1019 399 PRINTS Diaminopimelate decarboxylase signature 363 385 IPR002986 GO:0008836|GO:0009089
Ssu4g1019 399 PRINTS Diaminopimelate decarboxylase signature 55 72 IPR002986 GO:0008836|GO:0009089
Ssu4g1019 399 Hamap Diaminopimelate decarboxylase [lysA]. 1 397 IPR002986 GO:0008836|GO:0009089
Ssu4g1019 399 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 8 393 IPR009006 GO:0003824
Ssu4g1019 399 PANTHER DIAMINOPIMELATE DECARBOXYLASE 4 396 - -
Ssu4g1019 399 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 206 221 IPR022657 -
Ssu4g1019 399 SUPERFAMILY PLP-binding barrel 7 263 IPR029066 -
Ssu4g1019 399 PANTHER DIAMINOPIMELATE DECARBOXYLASE 1, CHLOROPLASTIC-RELATED 4 396 - -
Ssu4g1019 399 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 263 353 IPR022643 GO:0003824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1019 K01586 - gmx:100809499 761.525