Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1018 ATGGAGACACGAAGTGAGATAAGGCATTCAAAATTCAAGAGGATTTGTGTGTTCTGTGGGAGTAGCCCCGGCAAGAAGAGTAGCTATCAAGATGCTGCCATTGAGCTTGGCAACGAATTGGTCTCAAGGAACATCGATCTGGTGTATGGCGGGGGAAGCATTGGTCTAATGGGTTTAGTTTCACACGCTGTTCATGATGGAGGTCGCCATGTCATTGGAGTTATTCCCAAGACGCTCATGCCTCGAGAGCTTACTGGTGAAACAGTGGGAGAAGTAAAAGCTGTTGCTGATATGCACCAAAGGAAGGCAGAGATGGCGAAGCATTCAGACGCCTTTATTGCCTTACCAGGCGGATATGGGACTCTAGAGGAGCTTCTTGAAGTCATAACCTGGGCACAACTTGGGATTCATGACAAGCCGGTGGGATTAGTAAATGTTGATGGATACTTTAATTCCTTGCTGTCATTTATTGACAAAGCTGTGGAAGAGGGATTTATCAGTCCAAATGCTCGCCACATAATTGTATCAGCACCAACAGCGAAAGAGTTGGTGAAGAAATTGGAGGATTACGTTCCCTGTCATGAGAGTGTTGCTTCCAAGTTGAGCTGGCAGATGGAGCAGCAGCTCGCTTACCCTCAAGATTATGACATGTCAAGGTAG 660 0.4652 METRSEIRHSKFKRICVFCGSSPGKKSSYQDAAIELGNELVSRNIDLVYGGGSIGLMGLVSHAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLVNVDGYFNSLLSFIDKAVEEGFISPNARHIIVSAPTAKELVKKLEDYVPCHESVASKLSWQMEQQLAYPQDYDMSR 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1018 219 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 1 219 - -
Ssu4g1018 219 Pfam Possible lysine decarboxylase 57 187 IPR031100 -
Ssu4g1018 219 PANTHER LOG FAMILY PROTEIN YJL055W 1 219 - -
Ssu4g1018 219 TIGRFAM TIGR00730: TIGR00730 family protein 13 190 IPR005269 GO:0009691|GO:0016787
Ssu4g1018 219 Gene3D - 2 189 - -
Ssu4g1018 219 SUPERFAMILY MCP/YpsA-like 11 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1018 Ssu-Chr4 16333875 16337848 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1018 K22522 - gmx:100810030 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1018 4 16333875 16337848 Ssu4g1018 4 16333875 16337848 ECH