Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1011 ATGGTTAAAGGACATCGTATATCGTTGCGGCACCGATGTGCTTCTGCTTCTGAatgttatttgacttttttggtttttgtgtgTGACAGATATGATATCACCTTGAACAATGCAATTCTTGCGGAGGACAAGCACAAACCTATGTATGAAGAAATGGCTGAAAAATACAATGTGGAGTACATTGCTGGAGGTGCCACTCAAAATTCAATCAAGGTTGCTCAATGGATGCTTCAAGTGCCTGGTGCAACAAGTTACATGGGTGGCATAGGAAAGGATAAGTTTGGggaagagatgaagaagaatTCAAAGCTTGCTGGTGTAAATGTTCACTACTATGAAGATGAAACTACACCTACTGGAACTTGTGCTGTTTGTGTACACAGTGGTGAAAGGTCTCTTGTGGCAAACTTAGCAGCTGCAAATTGCTACAAGTCTGAGCATTTGAAGAGACCAGAAAATTGGGCACTAGTTGAAAAGGCCAAGTATATTTATATTGCTGGCTTTTTCCTCACTGTATCACCAGATTCCATCCAGTTAGTTGCCGAGCATGCTGCTGCAAATAACAAGATTTTCTCGATGAACCTTTCTGCCCCTTTTATCTGTGAGTTTTTCAGGGATGTACAGGAGAAAGCTCTACCGTATACAGactttatttttggaaatgagACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGACTGATAATGTTGAGGAGATAGCTCTAAAGATTTCCCAGTGGCCAAAGGCATCGGGAACTCACAAAAGGATAACAGTTATCACACAGGGTGTGGATCCTGTTTGTGTTGCTGAGGATGGGAAGGTGAAAAAGTTCCCTGTGGAACTTTTGCCTAAAGAAAAACTAGTTGACACAAATGGAGCAGGAGATGCATTTGTTGGAGGATTTCTTTCACAATTGGTTCAGGAGAAGCCCATTGAAGAATGTGTGAGAGCTGGCAATTATGCAGCAAACGTTATCATCCAGAGGTCTGGCTGCACGTACCCAGAGAAGCCTGATTTTCATTGA 1032 0.3992 MVKGHRISLRHRCASASECYLTFLVFVCDRYDITLNNAILAEDKHKPMYEEMAEKYNVEYIAGGATQNSIKVAQWMLQVPGATSYMGGIGKDKFGEEMKKNSKLAGVNVHYYEDETTPTGTCAVCVHSGERSLVANLAAANCYKSEHLKRPENWALVEKAKYIYIAGFFLTVSPDSIQLVAEHAAANNKIFSMNLSAPFICEFFRDVQEKALPYTDFIFGNETEARTFSKVHGWETDNVEEIALKISQWPKASGTHKRITVITQGVDPVCVAEDGKVKKFPVELLPKEKLVDTNGAGDAFVGGFLSQLVQEKPIEECVRAGNYAANVIIQRSGCTYPEKPDFH 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1011 343 PRINTS Adenosine kinase signature 116 131 IPR001805 GO:0004001|GO:0006166
Ssu4g1011 343 PRINTS Adenosine kinase signature 68 77 IPR001805 GO:0004001|GO:0006166
Ssu4g1011 343 PRINTS Adenosine kinase signature 85 99 IPR001805 GO:0004001|GO:0006166
Ssu4g1011 343 PRINTS Adenosine kinase signature 263 282 IPR001805 GO:0004001|GO:0006166
Ssu4g1011 343 PRINTS Adenosine kinase signature 154 180 IPR001805 GO:0004001|GO:0006166
Ssu4g1011 343 PANTHER - 29 342 IPR001805 GO:0004001|GO:0006166
Ssu4g1011 343 Pfam pfkB family carbohydrate kinase 31 337 IPR011611 -
Ssu4g1011 343 CDD adenosine_kinase 29 337 - -
Ssu4g1011 343 Gene3D - 50 343 IPR029056 -
Ssu4g1011 343 PANTHER ADENOSINE KINASE 2-LIKE ISOFORM X1 29 342 - -
Ssu4g1011 343 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 292 305 IPR002173 GO:0016773
Ssu4g1011 343 SUPERFAMILY Ribokinase-like 28 336 IPR029056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1011 Ssu-Chr4 16170126 16173973 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1011 K00856 - gmx:100810561 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1011 4 16170126 16173973 Ssu7g2457 7 47811077 47814749 PCT