Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0997 ATGGGAGAGCAAAAAGAATCGGCGAAGAATGAGGCCGATAAGAAGCACGACTcgggagaaaagaaaaacgaCGGACCCGCCCCTGTCGTTTTGAAACTCGATATGCATTGCGAGGGATGCGTCAAGAAGATCAAACGCGCCGTTCGCCATTTGGACGGTGTGGAAGACATTAAGGCCGATCTGTTAGGTAACAAGCTAACGGTTATTGGAAAAGTGGACCCTACCATGGTGCGAGATAAACTGGCGGAGAAAACTAAGAAGAAGGTTGAACTTATTTCCCCTCAGCCTAAGAAAGACGCCGCCGCCGGCGATGCACCACCGCCGGAGAAGAATCCGGAAGAGAAGCAACCCAAAGATAAAAAGCCCGAAGAAAAATCCCCGAAAGAGAGCACAGTGGTGTTGAAGATCAGATTGCACTGTGACGGTTGCATTCAAAAAATTCGGAAGATTATCCTCAGGACCAAAGGAGTTGAATCAGTGAACATTGAGGGAGGGAAGGATTTGGTGACGGTAAAGGGGACCATGGACGTGAAGGAAATGGTACCGTATTTGAGTGAGAAGCTGAAGCGGCACGTTGAGGTGGTCCCACCCAAGAAAGAGGACGATAAGAAAGAGAACAAGGaaggtggtggtgatgataagAAAGAGGGCGCAGGTGCACCCAAGGTGGAGATTAACAAAATGGAGCACTACGGGTACGCGTACCCACCTCCAGCCATGTACTGGTACGACGGATACGCACCTGGTCCAAGTAGTAGTAGCTACGCAGTAGAGGTTCAGCCAGAGTATTCGAATCAagggtataataataattacgtGAATTACCCGCATGAGTATGTGAACCAAGGTTACACGGTACAACCACCCCCGTTCTACCTGGATCCTCATCATCCTCCCCCACAGATGTTCAGTGATGAGAATCCCAATGCGTGTTCGGTGATGTGA 945 0.4688 MGEQKESAKNEADKKHDSGEKKNDGPAPVVLKLDMHCEGCVKKIKRAVRHLDGVEDIKADLLGNKLTVIGKVDPTMVRDKLAEKTKKKVELISPQPKKDAAAGDAPPPEKNPEEKQPKDKKPEEKSPKESTVVLKIRLHCDGCIQKIRKIILRTKGVESVNIEGGKDLVTVKGTMDVKEMVPYLSEKLKRHVEVVPPKKEDDKKENKEGGGDDKKEGAGAPKVEINKMEHYGYAYPPPAMYWYDGYAPGPSSSSYAVEVQPEYSNQGYNNNYVNYPHEYVNQGYTVQPPPFYLDPHHPPPQMFSDENPNACSVM 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0997 314 Gene3D - 128 201 - -
Ssu4g0997 314 Pfam Heavy-metal-associated domain 135 192 IPR006121 GO:0046872
Ssu4g0997 314 Pfam Heavy-metal-associated domain 33 88 IPR006121 GO:0046872
Ssu4g0997 314 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 6 1 314 IPR044594 GO:0046872
Ssu4g0997 314 ProSiteProfiles Heavy-metal-associated domain profile. 35 68 IPR006121 GO:0046872
Ssu4g0997 314 MobiDBLite consensus disorder prediction 1 23 - -
Ssu4g0997 314 MobiDBLite consensus disorder prediction 108 130 - -
Ssu4g0997 314 CDD HMA 35 90 IPR006121 GO:0046872
Ssu4g0997 314 MobiDBLite consensus disorder prediction 194 219 - -
Ssu4g0997 314 SUPERFAMILY HMA, heavy metal-associated domain 30 91 IPR036163 GO:0046872
Ssu4g0997 314 CDD HMA 138 173 IPR006121 GO:0046872
Ssu4g0997 314 Gene3D - 26 90 - -
Ssu4g0997 314 MobiDBLite consensus disorder prediction 83 130 - -
Ssu4g0997 314 PANTHER HEAVY METAL-ASSOCIATED DOMAIN PROTEIN 1 314 - -
Ssu4g0997 314 SUPERFAMILY HMA, heavy metal-associated domain 131 190 IPR036163 GO:0046872
Ssu4g0997 314 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0997 Ssu-Chr4 15943567 15945234 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0997 - - gmx:100792662 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0997 4 15943567 15945234 Ssu4g0997 4 15943567 15945234 ECH