Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0996 ATGCCTGCAACGCCATTCTCGTGTTCGTTCCTCACCCTTCAACCACGCTTCAATTCCTACGTTAACCCTATCTTCCGTTCACTCAGCTTCCAACTCTCTTCTTCGCCGCTCCCATTCAATGCTAACTTCTCTAGCGTCAGTCTCCATTCTTCGCTTTCGCGAGCGGCGGAGACCGATTCTCCGACCGGTGGCAGGTCCGGCGCGTTAACTCCTGGTCCCGCCGTCGCCGGCGATGTTCATAAAATCGACGTGAATCCTCCCAAGGGGACGCGTGACTTCCCTCCCGAAGACATGCGCTTGCGCAACTGGCTCTTCAACCATTTCAAAGAGGTTTCGCGGTTGTATGGATTCGAAGAGGTTGATTATCCGGTGCTTGAGTCGGAGGCATTGTTCACTAGGAAAGCAGGAGAGGAGATTAAGGACCAGCTTTATTGTTTTGAAGATCGTGGCAATCGCCGTGTTGCGTTGAGGCCTGAACTTACTCCTTCTTTGGCAAGGCTGGTGATACAGAAAGgGAAGTCTGTGACATTACCAATAAAGTGGTTCACTGTTGGACAATGTTGGCGGTACGAGAGAATGACAAGGGGGCGTCGTCGTGAGCACTACCAGTGGAACATGGATATTATTGGTGTTCCTGGGGTTATGGCTGAAGCAGAGCTTATATCTTCTATTGTCACTTTGTTCAAGCGAATAGGAATTACAGAATTAGATGTCGGATTTAAGGTTTCTAGTCGAAAGGTTCTACAGGaagtattaaattgttattcagTACCAGCAAATTTGTTTGGCAAGGTCTGCGTCATTATTGATAAAATTGAGAAAATTCCAGTTGATGAGATAAAGAAAGAGCTGAAAGCTGTTGGTCTATCACAAGAGGCTGTCCAGGAGCTATTGCAAGTCCTTTCTTTGAAGTCATTGACAGAGTTAGAAGAGAGACTCGGAAGCAGGGGGGAAGCAATTGCTGATCTAAAACAGCTATTCTCAATTGCTGAAAAAATTGGTTACTCTAAATGGCTTCAATTTGACGTGTCAGTTGTTCGTGGTCTTGCTTACTACACTGGAATTGTATTTGAGTAA 1077 0.4578 MPATPFSCSFLTLQPRFNSYVNPIFRSLSFQLSSSPLPFNANFSSVSLHSSLSRAAETDSPTGGRSGALTPGPAVAGDVHKIDVNPPKGTRDFPPEDMRLRNWLFNHFKEVSRLYGFEEVDYPVLESEALFTRKAGEEIKDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVTLPIKWFTVGQCWRYERMTRGRRREHYQWNMDIIGVPGVMAEAELISSIVTLFKRIGITELDVGFKVSSRKVLQEVLNCYSVPANLFGKVCVIIDKIEKIPVDEIKKELKAVGLSQEAVQELLQVLSLKSLTELEERLGSRGEAIADLKQLFSIAEKIGYSKWLQFDVSVVRGLAYYTGIVFE 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0996 358 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 89 358 IPR006195 -
Ssu4g0996 358 PANTHER HISTIDINE--TRNA LIGASE, MITOCHONDRIAL-RELATED 80 358 - -
Ssu4g0996 358 PANTHER HISTIDYL-TRNA SYNTHETASE 80 358 IPR004516 GO:0005737
Ssu4g0996 358 Gene3D Bira Bifunctional Protein; Domain 2 80 358 IPR045864 -
Ssu4g0996 358 CDD HisRS-like_core 97 358 IPR041715 -
Ssu4g0996 358 Pfam Histidyl-tRNA synthetase 89 358 IPR041715 -
Ssu4g0996 358 MobiDBLite consensus disorder prediction 55 93 - -
Ssu4g0996 358 SUPERFAMILY Class II aaRS and biotin synthetases 86 358 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0996 Ssu-Chr4 15899912 15922718 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0996 K01892 - gmx:100793186 671.389