Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0972 ATGGCAGCAACCTCAACATCACTGGCTTCTCAACTCTACATTGGCCTGCGCCGCCCCTGCCCCAAGCTCGATGCTTTCAATTCTCAATCTTTCTCCGCCTTCGACCCCAACCTTCGCCTGTCCCTATCTCCTCCCAAACCCTCACGCGCCGTCGTTGCCATGGCCGGCACCGGCAAGTTCTTTGTTGGTGGCAACTGGAAGTGTAACGGAACCAAAGACTCCATCAGTAAGCTCGTCACTGACTTGAACAGTGCAAAATTGGAGCCTGATGTTGATGTTGTTGTCGCACCTCCCTTTCTGTACATCAATCAAGTGAAAAACTCACTCACTGAGCGGATCGAAATATCTGCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCTTTCACTGGAGAAATCAGCGCGGAACAACTGAATGATCTTGGATGCAAGTGGGTTATTCTTGGACATTCTGAGCGAAGACATATTGTGGGAGAGAATGACGAGTTTATAGGAAAGAAAGCTGCTTATGCTTTGAGCCAGGGTCTTGGAGTGATTGCGTGCATTGGAGAATTGTTGGAAGAAAGGGAAGCTGGGAAAACTTTTGATGTTTGTTTTCGGCAATTGAAGGCTTTTGCAGATGCAGTTCCTAGTTGGGACAACATTGTTATTGCGTATGAACCTGTATGGGCCATTGGAACTGGCAAAGTGGCCACTCCCCAGCAAGCTCAGGAAGTACATGTAGCGGTTCGGGATTGGCTGAAAAAGAATGTCTCAGCTGAAGTTGCATCCAAAACGCGAATTATTTATGGAgGGTCTGTAAATGGAGGCAACAGTGCTGAGCTCGCAAAGCAAGAAGACATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGGGTCCCGAGTTTGCTATCATTGTCAATTCAGTCACATCCAAGAAAGTTGCGGCTTGA 930 0.4774 MAATSTSLASQLYIGLRRPCPKLDAFNSQSFSAFDPNLRLSLSPPKPSRAVVAMAGTGKFFVGGNWKCNGTKDSISKLVTDLNSAKLEPDVDVVVAPPFLYINQVKNSLTERIEISAQNSWVGKGGAFTGEISAEQLNDLGCKWVILGHSERRHIVGENDEFIGKKAAYALSQGLGVIACIGELLEEREAGKTFDVCFRQLKAFADAVPSWDNIVIAYEPVWAIGTGKVATPQQAQEVHVAVRDWLKKNVSAEVASKTRIIYGGSVNGGNSAELAKQEDIDGFLVGGASLKGPEFAIIVNSVTSKKVAA 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0972 309 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 59 301 IPR000652 GO:0004807
Ssu4g0972 309 PANTHER TRIOSEPHOSPHATE ISOMERASE 1 307 IPR000652 GO:0004807
Ssu4g0972 309 TIGRFAM tim: triose-phosphate isomerase 61 291 IPR000652 GO:0004807
Ssu4g0972 309 PANTHER TRIOSEPHOSPHATE ISOMERASE, CHLOROPLASTIC 1 307 - -
Ssu4g0972 309 CDD TIM 60 300 IPR000652 GO:0004807
Ssu4g0972 309 Pfam Triosephosphate isomerase 61 301 IPR000652 GO:0004807
Ssu4g0972 309 Gene3D Aldolase class I 45 308 IPR013785 -
Ssu4g0972 309 Hamap Triosephosphate isomerase [tpiA]. 58 301 IPR022896 GO:0004807|GO:0006096
Ssu4g0972 309 ProSitePatterns Triosephosphate isomerase active site. 217 227 IPR020861 GO:0004807
Ssu4g0972 309 SUPERFAMILY Triosephosphate isomerase (TIM) 56 301 IPR035990 GO:0004807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0972 Ssu-Chr4 15545327 15549210 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0972 K01803 - gmx:100819824 591.267