Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0969 ATGAGTTCATCCTCAGGTCAGAGCAGTGGCTATGATCTCTCTTTCAAGATCTTATTGATCGGAGATTCAGGTGTGGGAAAAAGTAGCCTACTTGTCAGCTTCATTTCCAATTCCGTTGAAGATCTTTCCCCCACCATTGGTGTTGATTTTAAGATCAAAACGCTCACAGTAGGTGGCAAGAGATTGAAATTAACGATTTGGGATACTGCTGGGCAGGAAAGGTTCAGGACTCTAACCAGCTCTTACTATAGAAAGGCACAAGGAATCATTCTCGTTTATGATGTCACAAGGAGAGAAACCTTTACAAACTTATCAGAAGTGTGGTCTAAGGAAGTGGCACTCTACTCAACTAATCAGGATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAGATGCTGAAAGGGCTGTAAGCAGAGAAGAGGGTTTAGCCCTTGCCAAAGAATTGGGGTGTTTGCTTCTTGAATGTAGTGCTAAAACTCGGGAAAATGTGGAGCAGTGCTTTGAGGAACTTGCTCTAAAGATAATGGAAGCTCCTAGTCTTTTGGAAGAAGGATCAACAGCAGTTAAAAGGAGTGGTTTAAGACAGAAACAAGAACCCCAAGCATCGCAAAATGGTGGTTGTTGCTCTTAA 636 0.4214 MSSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISNSVEDLSPTIGVDFKIKTLTVGGKRLKLTIWDTAGQERFRTLTSSYYRKAQGIILVYDVTRRETFTNLSEVWSKEVALYSTNQDCVKMLVGNKVDRDAERAVSREEGLALAKELGCLLLECSAKTRENVEQCFEELALKIMEAPSLLEEGSTAVKRSGLRQKQEPQASQNGGCCS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0969 211 SMART rab_sub_5 15 179 - -
Ssu4g0969 211 SMART arf_sub_2 5 180 - -
Ssu4g0969 211 ProSiteProfiles small GTPase Rho family profile. 8 179 - -
Ssu4g0969 211 CDD Rab18 15 176 - -
Ssu4g0969 211 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 211 - -
Ssu4g0969 211 PANTHER DRAB5-RELATED 1 211 - -
Ssu4g0969 211 MobiDBLite consensus disorder prediction 190 211 - -
Ssu4g0969 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 188 IPR027417 -
Ssu4g0969 211 ProSiteProfiles small GTPase Rab1 family profile. 10 211 - -
Ssu4g0969 211 ProSiteProfiles small GTPase Ras family profile. 6 211 IPR001806 GO:0003924|GO:0005525
Ssu4g0969 211 TIGRFAM small_GTP: small GTP-binding protein domain 15 171 IPR005225 GO:0005525
Ssu4g0969 211 ProSiteProfiles small GTPase Arf family profile. 8 177 - -
Ssu4g0969 211 MobiDBLite consensus disorder prediction 192 211 - -
Ssu4g0969 211 PRINTS Transforming protein P21 ras signature 154 176 - -
Ssu4g0969 211 PRINTS Transforming protein P21 ras signature 119 132 - -
Ssu4g0969 211 PRINTS Transforming protein P21 ras signature 55 77 - -
Ssu4g0969 211 PRINTS Transforming protein P21 ras signature 15 36 - -
Ssu4g0969 211 PRINTS Transforming protein P21 ras signature 37 53 - -
Ssu4g0969 211 Pfam Ras family 16 177 IPR001806 GO:0003924|GO:0005525
Ssu4g0969 211 SMART ran_sub_2 20 210 - -
Ssu4g0969 211 Gene3D - 8 210 IPR027417 -
Ssu4g0969 211 SMART ras_sub_4 12 179 - -
Ssu4g0969 211 SMART rho_sub_3 17 180 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0969 Ssu-Chr4 15467768 15471093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0969 9 196 EF-hand Containing Proteins AT5G27540 27.692 1.64e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0969 K07910 - gmx:100799887 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0969 4 15467768 15471093 Ssu4g0969 4 15467768 15471093 ECH
Ssu4g0969 4 15467768 15471093 Ssu7g2475 7 48237530 48240234 PCT