Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0967 ATGGTGAAGGCCTACCTCCAATACGAGCCGGCGGCGTCGTTTGGGGTGATAGCGTCGGTGGAGTCGAACATCGCATACGACAGCTCCGGCAAGCACCTCCTCTCTCCGGCGCTCGAGAAGATCGGCGTTTGGCACGTGCGGCAGGGCCTCTGCACCAAAACCCTAACTCCTTCCTCTTCGTCGCACGGTCCTTCCCTCGCTGTCACCTCCATCGCCTCCTCCCCTTCCTCCCTGATTGCTGGTGGTTATGGTGATGGTAGCATAAGGATTTGGGACTCTGATAAAGGAGCGTGTGAGACTACCTTAAATGGACACAAGGGAGCTGTCACTGCTCTTCGTTACAATAAGGCTGGTTCCTTGCTCGCCTCTGGTAGCAAGGATAAtgatgttattttatgggatgtGGTTGGAGAGACTGGGCTCTTTCGCCTTCGCGGTCATCGCGATCAGGTGACTGATGTTGTTTTCATGAGTTCTGGGAAAAAGCTTGTTAGTTCCTCCAAGGACAAGTTCTTGAGAGTGTGGGATCTTGATACCCAGCACTGTATCCAAATTGTTGGTGGCCATCATAGTGAAATATGGTCCCTAGATATTGATCTGGATGAAAGATATCTGGTCACCGGTTCTGCAGATAAGGAACTTCGTTTTTATGCAATCAGGCATGAGTCTGTGGATGGGGAGTCTGTAAATGGCGGTGGAAAATCCTCTGATCAAAACAAATGGGAAGTTTTGAGGACTTTTGGTGAAATTCAGCGGCAAAGCAAGGATAGAGTTGCAACGGTGCAGTTCAACAAGTCAGGGAGTTTGTTAGCATGCCAAGTTGCTGGAAAGACAGTAGAAATATACCGTGTATTGGATGATGCTGAAGCAAAGCGCAAAGCAAAACGTAGGGTTCACCGtaagaaagagaagaaacatagtaaAGAGGCTTTGGAGGGAGTAGAAAATGGAGACAAGAATAATGAGAACAAAGGAGATAATTCTTCTGTCACTCATGGGCCCATAGAAACAAGTATCCCCACAGTTACTGTGCCTGATGTTTTTAAGCTGTTGCATACTATTAGAGCTAGCAAAAAGATATGCTCCATTTCTTTCTGTCCAATCACTCCGAAGAATTCACTGGCTAGTTTAGCGTTGTCCCTGAACAATAATCTACTTGAGTTTTACTCCATTGAACTTGGTGAAACCAAAAAAACACTTGCTATTGATCTTCAAGGGCACCGTTCTGATGTTAGAAGTGTCACGCTTAGTTCAGACAACACTTTTCTGATGTCAACCAGTCACAATGCAGTAAAGATTTGGAATCCAAGTACTGGCTCTTGCCTAAGGACTATTGATTCTGGGTATGGACTATGCAGTTTAATTCTTCCCAGTAACAAGTATGGacttgttggaactaaagatgGAACCATAGAAATTATTGACATTGGAAGTGGCACTTGTCTTGAAGTAATGGAAGCTCATGGTGGTTCTGTTCGCTCAATTTCTGCCCTACCACATAAAAATGGTTTTGTCACAGGAAGTGCAGATCATGATGTAAAATTTTGGGAGTACCAAATTAAGCGAAAAACTGGTCAAGCTACTAAGCAACTCATTGTATCAAATGTCAGTACCTTGAAAATGAATGATGATGCTCTTGTGGTTGCAATTAGCCCTGATGCTAAATATATTGCTGTTGCTCTCTTGGATAGTACTGTGAAGGTTCACTTTGTAGACACATTcaaattctttctttcattATATGGCCACAAACTGCCTGTTCTGTGTATGGATATCTCATCAGATGGAGATTTAATCGTGACTGGCTCTgcagataaaaatttaaagatctGGGGTTTGGACTTTGGTGACTGTCATAAATCCATTTTTGCTCATGCTGACAGTGTTATGGCAGTGCAATTTGTTCCCAAGACACATTATGTCTTCAGTGTTGGAAAAGATCGCCTAGTAAAATATTGGGATGCTGATAAATTTGAGCTGCTGTTGACTCTCGAAGGACATCATGCTGATATTTGGTGTCTTGCAGTCAGTAATCGTGGTGATTTTATTGTCACTGGATCTCATGATCGTTCTATCCGCCGCTGGGATCGCACTGAAGAGCAGTTTTTCATTGAGgaagaaaaggagaaaaggtTGGAAGAAATGTTTGAGGCTGATCTTGACAATGCATTTGAAAACAGGTATGCATCAAAGGAAGAAATACCAGAGGAGGGAGCTGTGGCTTTAGCTGGGAAACAAACCCAGGAAACCCTTACTGCAACTGACTTAGTTATTGAGAGATTAGACATTGCAGAAGCTGAAAAAAAGCGTATTGCAGAACATCAGGAGGAGGAAAACAACAGAAATGTTGCTGTGTTCCAAGCAAATCCGCATATGAATGGCTTTCACCTTCTGACTATGTTCTAA 2406 0.4194 MVKAYLQYEPAASFGVIASVESNIAYDSSGKHLLSPALEKIGVWHVRQGLCTKTLTPSSSSHGPSLAVTSIASSPSSLIAGGYGDGSIRIWDSDKGACETTLNGHKGAVTALRYNKAGSLLASGSKDNDVILWDVVGETGLFRLRGHRDQVTDVVFMSSGKKLVSSSKDKFLRVWDLDTQHCIQIVGGHHSEIWSLDIDLDERYLVTGSADKELRFYAIRHESVDGESVNGGGKSSDQNKWEVLRTFGEIQRQSKDRVATVQFNKSGSLLACQVAGKTVEIYRVLDDAEAKRKAKRRVHRKKEKKHSKEALEGVENGDKNNENKGDNSSVTHGPIETSIPTVTVPDVFKLLHTIRASKKICSISFCPITPKNSLASLALSLNNNLLEFYSIELGETKKTLAIDLQGHRSDVRSVTLSSDNTFLMSTSHNAVKIWNPSTGSCLRTIDSGYGLCSLILPSNKYGLVGTKDGTIEIIDIGSGTCLEVMEAHGGSVRSISALPHKNGFVTGSADHDVKFWEYQIKRKTGQATKQLIVSNVSTLKMNDDALVVAISPDAKYIAVALLDSTVKVHFVDTFKFFLSLYGHKLPVLCMDISSDGDLIVTGSADKNLKIWGLDFGDCHKSIFAHADSVMAVQFVPKTHYVFSVGKDRLVKYWDADKFELLLTLEGHHADIWCLAVSNRGDFIVTGSHDRSIRRWDRTEEQFFIEEEKEKRLEEMFEADLDNAFENRYASKEEIPEEGAVALAGKQTQETLTATDLVIERLDIAEAEKKRIAEHQEEENNRNVAVFQANPHMNGFHLLTMF 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0967 801 Gene3D - 653 710 IPR015943 GO:0005515
Ssu4g0967 801 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 102 135 - -
Ssu4g0967 801 SUPERFAMILY WD40 repeat-like 56 519 IPR036322 GO:0005515
Ssu4g0967 801 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 135 IPR001680 GO:0005515
Ssu4g0967 801 Coils Coil 761 781 - -
Ssu4g0967 801 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 580 614 - -
Ssu4g0967 801 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 101 IPR001680 GO:0005515
Ssu4g0967 801 PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 1 785 - -
Ssu4g0967 801 Gene3D - 447 647 IPR015943 GO:0005515
Ssu4g0967 801 ProSiteProfiles Trp-Asp (WD) repeats profile. 622 663 IPR001680 GO:0005515
Ssu4g0967 801 Gene3D - 19 322 IPR015943 GO:0005515
Ssu4g0967 801 MobiDBLite consensus disorder prediction 305 322 - -
Ssu4g0967 801 MobiDBLite consensus disorder prediction 293 337 - -
Ssu4g0967 801 Pfam WD domain, G-beta repeat 97 134 IPR001680 GO:0005515
Ssu4g0967 801 Pfam WD domain, G-beta repeat 578 611 IPR001680 GO:0005515
Ssu4g0967 801 Pfam WD domain, G-beta repeat 181 217 IPR001680 GO:0005515
Ssu4g0967 801 Pfam WD domain, G-beta repeat 142 176 IPR001680 GO:0005515
Ssu4g0967 801 Pfam WD domain, G-beta repeat 51 92 IPR001680 GO:0005515
Ssu4g0967 801 Pfam WD domain, G-beta repeat 404 435 IPR001680 GO:0005515
Ssu4g0967 801 Pfam WD domain, G-beta repeat 659 696 IPR001680 GO:0005515
Ssu4g0967 801 Pfam WD domain, G-beta repeat 479 516 IPR001680 GO:0005515
Ssu4g0967 801 ProSiteProfiles Trp-Asp (WD) repeats profile. 485 517 IPR001680 GO:0005515
Ssu4g0967 801 ProSitePatterns Trp-Asp (WD) repeats signature. 121 135 IPR019775 -
Ssu4g0967 801 CDD WD40 404 696 - -
Ssu4g0967 801 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 664 696 - -
Ssu4g0967 801 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Ssu4g0967 801 ProSitePatterns Trp-Asp (WD) repeats signature. 163 177 IPR019775 -
Ssu4g0967 801 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 622 654 - -
Ssu4g0967 801 MobiDBLite consensus disorder prediction 323 337 - -
Ssu4g0967 801 ProSiteProfiles Trp-Asp (WD) repeats profile. 580 621 IPR001680 GO:0005515
Ssu4g0967 801 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 179 - -
Ssu4g0967 801 CDD WD40 98 517 - -
Ssu4g0967 801 SMART WD40_4 615 654 IPR001680 GO:0005515
Ssu4g0967 801 SMART WD40_4 240 283 IPR001680 GO:0005515
Ssu4g0967 801 SMART WD40_4 54 92 IPR001680 GO:0005515
Ssu4g0967 801 SMART WD40_4 478 517 IPR001680 GO:0005515
Ssu4g0967 801 SMART WD40_4 137 176 IPR001680 GO:0005515
Ssu4g0967 801 SMART WD40_4 532 570 IPR001680 GO:0005515
Ssu4g0967 801 SMART WD40_4 438 475 IPR001680 GO:0005515
Ssu4g0967 801 SMART WD40_4 397 435 IPR001680 GO:0005515
Ssu4g0967 801 SMART WD40_4 657 696 IPR001680 GO:0005515
Ssu4g0967 801 SMART WD40_4 95 134 IPR001680 GO:0005515
Ssu4g0967 801 SMART WD40_4 179 218 IPR001680 GO:0005515
Ssu4g0967 801 SMART WD40_4 573 612 IPR001680 GO:0005515
Ssu4g0967 801 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 696 IPR001680 GO:0005515
Ssu4g0967 801 Coils Coil 285 305 - -
Ssu4g0967 801 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Ssu4g0967 801 PRINTS G protein beta WD-40 repeat signature 599 613 IPR020472 -
Ssu4g0967 801 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Ssu4g0967 801 SUPERFAMILY WD40 repeat-like 358 698 IPR036322 GO:0005515
Ssu4g0967 801 Gene3D - 327 446 IPR015943 GO:0005515
Ssu4g0967 801 PANTHER WD REPEAT-CONTAINING PROTEIN 3 1 785 - -
Ssu4g0967 801 ProSiteProfiles Trp-Asp (WD) repeats profile. 404 444 IPR001680 GO:0005515
Ssu4g0967 801 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 220 IPR001680 GO:0005515
Ssu4g0967 801 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 485 517 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0967 577 705 Miscellaneous Gene Families AT5G08390 27.132 1.73e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0967 K14556 - gmx:100775810 1454.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0967 4 15394834 15401803 Ssu4g0967 4 15394834 15401803 ECH