Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0948 ATGGCATCCCAAGCACCTCAGCTTCACTTTGTTTTGTTTCCACTCATGTCACCGGGCCACATGCTCCCCATGATTGACCTTGCAACAATATTAGCACAGCATAACATGATTGTCACCGTAGTGACGACCCCGCATAACGCTTCCCGTTTCTCAGAAACCTTTGCTCGTGCTTCGGACTCAGGCCTTCACCTCCGATTGGTTCAGCTCCAATTTCCATCCAAAGATGCTGGATTTCCAGAAGCGTGTGAGAATTTTGACATGCTGCCTTCAATGGGCTTGGCCTGGAGTTTCTTGTCTGCCGCAAACACCATTCTACAGGAACCGGCTGAGAAAGTGTTTGAAGAGTTAACACCAAAACCAAACTGCATTATCTCTGATGTGAGTTTTCACTACACAGCCCACATCGCCACCAAATTCAAAATTCCCAGAATTTCTTTCTACGGAGTTAGTTGCTTCTGTCTCTCTTGGAATCAAAAATTGGTCACTTCTAAGGTTCTTGAGAGCATAGCTACAGATTCAGAGTACTTTTTCATACCTGACATCCCTGACAAAGTTGAGATCACCAAAGCACAGACGCCATATGGACCAAAGAATGAAAACTGGCCCGAGTTTGTTGGCAAAATGGCCGCAGCTGAAACGGTTACTTATGGGGTGGTCGTGAATTCTTTCGAGGAGTTGGAGCCAGCATATGCAAGGGATTTCAAAAAGGCAAGAAATGATAAGGTGTGGTGTGTTGGCCCTCTTTCACTTAGAAACAGGAGCGACTTGGATAAGGCTCAGAGAGGGAACAAGACCTCAAATGATGCGCACAATTGCATGAAGTGGCTTGACTTGAAAAAACCAAGTTCAGTAATTTACGTGTGCCTTGGAAGCATGTGCAATTTAACTCCGTTGCAGTTGATAGAGCTTGGTATGGCCATAGAAACAGCTAAAATACCATTCATTTGGGTTATCAGGGAAAGAAATCAAACAGAAGAATTGAACAAGTGGATTAAGGAAACGGGGTTTGAGGAAAGGACCAAGGGTTTGGGCCTTTTGGTTCGGGGTTGGGCTCCTCAGGTACTAATACTGTCACACCCTGCAATTGGAGGGTTCTTGACACACTGCGGTTGGAACTCAACCTTAGAAGCAATATGTGCTGGCGTGCCAATGCTTACGTGGCCATTGTTTGGGGATCAATTCTTCAATGAAAGGTTCGTTGTGCAGATACTAAGAATTGGAGTAAAAGTTGGGGTGGAAAGTCCCGTGAACTGGGGCGATGAAGAGAAAGCTGGGGTCTTGGTGAAGAAGGAAGATGTTCTGAGGGCTATAGAGAAGTTAATGGATGAGGGAGATGAAAGtgaagagagaaggaaaagggCTAGAGAGCTTGCGGAGATGGCTAAGAGTGCGGTAGAAGGAGGATCCTCTCACTTCAATTTGACCCGGCTAATCCAAGATATCACGCAACAGTCCAACAAAGAGTAA 1467 0.4506 MASQAPQLHFVLFPLMSPGHMLPMIDLATILAQHNMIVTVVTTPHNASRFSETFARASDSGLHLRLVQLQFPSKDAGFPEACENFDMLPSMGLAWSFLSAANTILQEPAEKVFEELTPKPNCIISDVSFHYTAHIATKFKIPRISFYGVSCFCLSWNQKLVTSKVLESIATDSEYFFIPDIPDKVEITKAQTPYGPKNENWPEFVGKMAAAETVTYGVVVNSFEELEPAYARDFKKARNDKVWCVGPLSLRNRSDLDKAQRGNKTSNDAHNCMKWLDLKKPSSVIYVCLGSMCNLTPLQLIELGMAIETAKIPFIWVIRERNQTEELNKWIKETGFEERTKGLGLLVRGWAPQVLILSHPAIGGFLTHCGWNSTLEAICAGVPMLTWPLFGDQFFNERFVVQILRIGVKVGVESPVNWGDEEKAGVLVKKEDVLRAIEKLMDEGDESEERRKRARELAEMAKSAVEGGSSHFNLTRLIQDITQQSNKE 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0948 488 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 283 400 IPR002213 GO:0008194
Ssu4g0948 488 Coils Coil 430 457 - -
Ssu4g0948 488 ProSitePatterns UDP-glycosyltransferases signature. 350 393 IPR035595 -
Ssu4g0948 488 PANTHER GLYCOSYLTRANSFERASE 3 488 - -
Ssu4g0948 488 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 8 483 - -
Ssu4g0948 488 CDD GT1_Gtf-like 8 464 IPR002213 GO:0008194
Ssu4g0948 488 Gene3D Glycogen Phosphorylase B; 274 466 - -
Ssu4g0948 488 Gene3D Glycogen Phosphorylase B; 6 273 - -
Ssu4g0948 488 PANTHER GLYCOSYLTRANSFERASE 3 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0948 Ssu-Chr4 15109417 15110883 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0948 6 484 Glycosyltransferase AT2G36760 53.734 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0948 K13496 K22771 gmx:112997714 835.869