Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0939 ATGAAGCTCCTGGAAAAGGATTTCGCCGTGAACCAAACCGGAACCGCGAAGATCGTGGCCGAAGAACCCGACGACGTGTGGCTCCTCTACAACCTCATCCTCCCCGGCGACGTCGTCTCCGCCGACACCACCCGCAAAGTCCACCTCGAATCCACCACCAAGAACACCGCCTCACGTGTCAAACTCACCCTCCACCTCAAAGTCACGTGCCGCGACTTCCACAAAGACTCCTCCACCCTCCGCCTCCACGGCCGCAACCTCCAACCCAACCAACACGTCGCCGCCGGCTCCTTCCACACCCTAACCCTAGAGCCCAACAAACCCTTCCACCTCCGCAAGAAGCTCTGGCAAGACGACGCCGTCCGGGCCCTAAACGAGAGCACCGAAAACTCCGATTCTTCCCCCGACCTCGCCGTCGTTCTCTTCCACCAACGCCACGCCGAGATCTGCCTCGTCGGACGAGGAGCCGCCACTCGCTGCTCCAAGATCGAACCCTCGGGGAAAACCGCTTCCGTTTCCTCGCCCGCGTTTTTTCGGCAGGTGTTTGCGGCGTTCGCGAAGCACGTGGATTTTAAGGTTGTTAAGGGCGTGGTGATAGCGAGCGAGGAGTTCCGTAGGTTTGTGCTGTCGGAAGCGAGGAGGCTGAGGATGCGGTGGATCGAGGAGAACCAGTCGCGCGTGGTTGTTGTGGAGGGGGATCTGGGGAAGGTATTGGGTGACCGGGCGGTGACGGATTTGGTGAAGGACGGCAGGGTTGGGGTGTTTAGGGAGTTGTGGGAGATGGTGTGCAACAATTCGGATCGCGCGTGTTATGGACCCGAGGAGGTGGAGCGTGCGAGGGAGATGAGGGCCGTTGAGACGCTTTTGATCACCGATGAGCTTTACAGGAATGAAGAGGTTGGGACGAGGCAGAGGTACGAGGGTTTGGTGAAGTCGGTGAAGGAGGGTGGGGGAAAGGCTATGGTGTATTCGTCGTCGCATGTTTCGGCTCCGCAACTGTCGCAGCTCACGGGTGTTGCCGCCATTCTCAGGTTTCCCTTGCCTGATCTCCAACTCGACGACGTGAATGGGTGTTAA 1077 0.5933 MKLLEKDFAVNQTGTAKIVAEEPDDVWLLYNLILPGDVVSADTTRKVHLESTTKNTASRVKLTLHLKVTCRDFHKDSSTLRLHGRNLQPNQHVAAGSFHTLTLEPNKPFHLRKKLWQDDAVRALNESTENSDSSPDLAVVLFHQRHAEICLVGRGAATRCSKIEPSGKTASVSSPAFFRQVFAAFAKHVDFKVVKGVVIASEEFRRFVLSEARRLRMRWIEENQSRVVVVEGDLGKVLGDRAVTDLVKDGRVGVFRELWEMVCNNSDRACYGPEEVERAREMRAVETLLITDELYRNEEVGTRQRYEGLVKSVKEGGGKAMVYSSSHVSAPQLSQLTGVAAILRFPLPDLQLDDVNGC 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0939 358 PANTHER PELOTA 1 351 IPR004405 GO:0070481|GO:0070966|GO:0071025
Ssu4g0939 358 PANTHER EUKARYOTIC RELEASE FACTOR 1 (ERF1) FAMILY PROTEIN 1 351 - -
Ssu4g0939 358 Pfam eRF1 domain 1 1 127 IPR005140 -
Ssu4g0939 358 SUPERFAMILY L30e-like 254 350 IPR029064 -
Ssu4g0939 358 SUPERFAMILY Dom34/Pelota N-terminal domain-like 1 128 IPR038069 -
Ssu4g0939 358 Gene3D - 251 357 IPR029064 -
Ssu4g0939 358 SMART eRF1_1_2 1 129 IPR005140 -
Ssu4g0939 358 SUPERFAMILY Translational machinery components 133 251 - -
Ssu4g0939 358 Gene3D eRF1 domain 2 135 250 IPR042226 -
Ssu4g0939 358 Gene3D Pelota, domain A 1 130 IPR038069 -
Ssu4g0939 358 Pfam eRF1 domain 3 256 347 IPR005142 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0939 Ssu-Chr4 14953491 14954567 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0939 K06965 - gmx:100803618 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0939 4 14953491 14954567 Ssu4g0939 4 14953491 14954567 ECH