Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0934 ATGGGGAGGAGTAGCGGACGAGACCGAAGACGAAGAAGATCAGATGACTCTGCATCCGAGTCACCTTCCGAGTCCGACTCCGAGTCCGACAAACGCCACCGTAGCAGTAGTCGCCGGTCGCGGCGGGACTCCGACAGTGATAGGAAGAAGAAGTCCTCGAGGACCATCACAGAAGAGGAAATTGCGCAGTACATGGCCAAAAAGGCACAAACAAAGGCAATGAAAGTCGCTAAAAAGTTGAAAACCAGTACGGTATCGGGTTATTCCAACGATTCGAATCCGTTCGGTGACTCTAATCTCAACGAGAAGTTTGTTTGGCGCAAGAAGATTGAGCGCGATGTTGCTCAAGGCGTGTCTATTGATACGTTTTCAGTTAAAGCTGAGAAAAAGAGACAGAGGGAAAGGATGGCAGAAATTGAAAAAGTGAAGAAGAGAAGGGAGGAAAGGGCACTTGAGAAGGCCCGACACGAGGAAGAAATGGCACTGTTAGCCAGAGAACGTGCTCGAGCTGAGTTTCAGGactgggaaaaaaaagaagaggagTTTCATTTTGATCAAAGCAAAGTTAGGTCAGAAATTAGATTGCGTGAAGGGCGTGCCAGACCAATTGATGTCCTAACCAAGCATCTCAATGGCTCTGATGATTTGgatatagaaataaatgaacCATACATGGTGTTCAAGGGTTTGACTGTGAACGAAATGAACGAGCTACGTGACGACATCAAAATGCATCTGGACCTTGACAGGGCAACACCAACTCATGTAGAATATTGGGAGGCACTCCTTGTGGTGTGTGATTGGGAGCTAGCTGAAGCTCGAAAAAAGGATGCGCTTGATCGAGCTAGGGTGCGTGGAGAAGAACCCCCTACTGAGCTGCTTGCAGAAGAAAGGGGTCTGCATTCCAGTGTTGAGCCAGATGTGAAGAAGCTTTTGCACGGGAAGACTCATGCAGAGTTGGAGGCTTTACGGGTTCACATTGAATCAGAAATGCGTACTGGTACAGCAAAGGTGGTTGAGTATTGGGAGGCCATTTTAAAACATCTCCACATATATAAAGCCAAGGCTTGTTTAAAGGAAATTCATGCTAAATTGCTACGTAAGCATTTGCAAAGTCTTGAGCAACCATTGGAGGATGAAGATAAATTGGAAAATGCTCAAGTTATAATACCTAAGGAAGAAGCTACTGAGGATGATATTAAAGtCCGATCTGCAGATGAATCATTCTCACCAGAGCCCATTAGAGAGGAtcaagaagatgaagatgaggCTGGATCATTTTCACCCCAACTGTTGCATGGTGATGAAAATGAGGAAGCTATTGACCCTGAAGAGGACAGAGCTATGCTGGAGCGGAATCGTAAGGCTGTATTAGAAGAGCAACAAAGACGAGTTCAGGAAGCAATGGCATCAAAGCCAGCTCCTTCTGAAGATAATTTTGAGATGAAGGCCTTAAAAGCTATGGGGGATATGGAAGATGGAGATGCTGTGTTCGGATCTGGTGCTGAAGTGAACCTGGATTCCCAGGTTTATTGGTGGCATGACAAATACAGGCCTAGGAAGCCAAAGTATTTCAACCGTGTTCACACTGGATATGAGTGGAACAAATATAATCAGACTCACTATGATCATGACAACCCACCTCCGAAGATTGTGCAAGggtacaaatttaatattttctatccTGATCTTGTAGACAAGACAAAAGCCCCAACCTATACCATTGAGAAGGATGGCAGCAACGGGGAGACTTGCATTATAAGATTCCATGCAGGGCCACCATATGAAGACATAGCCTTCCGCATTGTAAACAAAGAATGGGAATATTCTCATAAGAAAGGTTTTAAGTGCACATTTGAACGTGGAATTCTGCATGTGTACTTCAATTTCAAACGCCACCGCTACCGCAGATAA 1914 0.4352 MGRSSGRDRRRRRSDDSASESPSESDSESDKRHRSSSRRSRRDSDSDRKKKSSRTITEEEIAQYMAKKAQTKAMKVAKKLKTSTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVAQGVSIDTFSVKAEKKRQRERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRARPIDVLTKHLNGSDDLDIEINEPYMVFKGLTVNEMNELRDDIKMHLDLDRATPTHVEYWEALLVVCDWELAEARKKDALDRARVRGEEPPTELLAEERGLHSSVEPDVKKLLHGKTHAELEALRVHIESEMRTGTAKVVEYWEAILKHLHIYKAKACLKEIHAKLLRKHLQSLEQPLEDEDKLENAQVIIPKEEATEDDIKVRSADESFSPEPIREDQEDEDEAGSFSPQLLHGDENEEAIDPEEDRAMLERNRKAVLEEQQRRVQEAMASKPAPSEDNFEMKALKAMGDMEDGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRHRYRR 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0934 637 MobiDBLite consensus disorder prediction 1 57 - -
Ssu4g0934 637 Pfam Conserved mid region of cactin 165 362 IPR018816 -
Ssu4g0934 637 Pfam Cactus-binding C-terminus of cactin protein 513 637 IPR019134 GO:0005515
Ssu4g0934 637 PANTHER BNAC05G02180D PROTEIN 6 637 - -
Ssu4g0934 637 Coils Coil 129 173 - -
Ssu4g0934 637 MobiDBLite consensus disorder prediction 384 444 - -
Ssu4g0934 637 MobiDBLite consensus disorder prediction 384 412 - -
Ssu4g0934 637 SMART CactinC_cactus_3 513 637 - -
Ssu4g0934 637 MobiDBLite consensus disorder prediction 1 59 - -
Ssu4g0934 637 PANTHER POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 6 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0934 Ssu-Chr4 14888012 14892908 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0934 K25058 - gmx:100780087 1127.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0934 4 14888012 14892908 Ssu4g0934 4 14888012 14892908 ECH