Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0930 ATGGAGAGTGTAAATTGCAGTTGCAATAGAGGATATGGGATTGGTAGTAGTATGGATAGATGGCAACCGTGCCTCCATACCAAATCCTTCAACTCTTCCCTTTCTCTGAAACCACCATCCCCCCACCCCCTTTCCTTCTCTTTCCGTCACAAACCCTCCACCCTCCGCCATGCCACCCACTACCTTCCCGAGTCTCACTCCCTCCTCCACGCCCTCCACGTGTCCTCCCGCAGCGGCGACACCCACCTCGCCAAGACCGTCCACGCCACCCTCCTCAAACACGACGAAGACACCCACCTCTCCAACGCCCTCATCTCCTCGTACCTCAAACTCGGTCTCTTCCCCCACGCGCTCCGCGTCTTCCTCTCCCTCCCTTCCCCCAACGTCGTCTCCTACACCGCCCTCATCTCCGCCCTCTCCAAGTCCCGCCGCGAGCGCCACGCGCTCGCCCTCTTCCTCCGCATGACGCGCTCCCACGTCCCCCCCAACGAGTACACATACGTCGCCGTTTTAACCGCGTGCGCGCGAATCCTCCACTCCCACTTGGGCCTCCAGGTCCACGCCGCCGCACTCAAAACGGCCCATTTCGACTCCACCTTCGTCGCAAACGCGCTCGCCTCTCTCTACGCCAAGTGTGAATCCTTCCAGGCCGCGCTTAAGTTGTTTAACCAAACACGGCACAGGGACATTGCGTCGTGGAACACTGTTATCTCCGCTGCGGTGCAGGAGTCTTTATACGACACCGCGTTTCGGTTATTCCGTGACATGCAGGCGACGGATGCGTTTAGAGTGGATGATTTCACGTTGTCGATACTTTTGACCGCGTGTGCGTCGTTGATGGAAGGCCAGCAAGTTCACGCGCACGCTATTAAATTAGGGTTGGAGACTGATTTGAACGTTGGGAATGGACTTATTGGGTTTTACTCGAAATGTGGAATTCTTGATGAGGTGGAGTGGTTGTTCGAGGGGATGAGGGTGAGGGATGTTGTAACTTGGACTGAGATGGTGACCGCGTATATGGAGTTTGGGTTGGTGGATTTGGCTTTGAAGGTGTTTGATGAAATGCCGGAGAAGAATTCGGTGTCTTATAACGCAGTTTTGTCTGGGTTTTGTCAAAACGGGGAAGGTTTAGAGGCTTTGGAGTTGTTTATTAAAATGGTGGAGGAGGGTTTGGAGTTGACGGATTTTAGTTTGACTAGTGGTGTTGATGCTTGCGGCTTGCTTGGTGATTACAAGGTCAGCAAGCAGGTTCATGGGTTTGCGGTGAAGTTTGGGTTTGGATCGAATGGTTGTGTTGAGGCTGCGTTGCTTGACATGTACACGAGGTGTGGGAGGATGGTGGATGCGGAGAAGATGTTTTTGAGGTGGGAGTTGGAGGAGTTTAGCTCTGTGGCTTGGACATCCATGATATGCGGCTATGCTCGAAACGGGCGAATGGAGGAGGCGATTTCTCTTTTCCATGTTGGTCGATCGGATGGGAAGCTGAGAATGGATGAAGTTGCAGCGGCTTCGGTGCTTGGTCTTTGTGGAACTGTTGGCCATCTTGATATGGGTAAGCAAATTCACTGCCATGTTGTCAAATGTGGCTTGCAATCTAATATGGAAGTTGGAAATGCACTTGTTAGCATGTATTTTAAGTGTGGGAATGTGGATGATGCAATGAGGATGTTTAATGATATGCCTTGTACTGATGTGGTTTCGTGGAATACTTTGATTTCTGGTAATCTTATGCTCAGACAGGGGGATAGAGCATTGGAGGTATGGGTGAAAATGCGGGAGGAGGGCATAAAGCCTGACCAAATTACGTTTGTTTTGATAATTTCGGCTTACAGGCAAACTAActcaaatttggttgatgattgtcGTAGTTTGTTTGATTCAATGAGAGCTGTTTATCAAATTGAGCCCACATCCGAGCATTATGCTTCCTTCATCAGTGTTTTGGGTCGCTGGGGTCTTCTGCAAGAAGCACTACAAACCATCAATAAGATGCCTTTCCAGCCTTCAGCTCTTGTTTGGCGCTCTTTGCTTGATGGGTGCAGACTGCATAAGAATACAATGATTGGAAAATGGGCTGCTCAGAATATTCTTTCCCTAGAACCTAAAGATCCTTCAACGTTTATACTTGTTTCAAATTTGTATTCTGCTTCTGGGAGATGGGACCGCTCTGAAATGGTCATGGAGAATATGAGAGAAAAGGGGTTTCGCAAACACCCAGCTCAAAGTTGGATCatttgtcaaaagaaaatacatacatttTATCCAAGAGATAGATCGCATCCACAGGAGAAAGACATATATAGTGGATTGGAGATTCTGATCTTGGAGTGCCTAAAACTTGGATATGAACCTGACACGAGCTTTGTTCTTCATGAAGTAGAGGAGCATCACAAGAAAACTTTTCTATTCCATCACAGTGCTAAACTGGCAGCAACTTACGGGATACTGATGACCAAGCCTGGAAAACCCATTCGGGTTGTAAAGAACATCCTTCTTTGTGGGGACTGCCATGCATTCTTAAAATATGCATCTATTGTCACAAAGAGGGATATATTTCTGAGAGATTCTTCTGGATTTCATTATTTCTCCAATGGACAGTGCTCGTGTAAAGACTGCTGGTGA 2622 0.4798 MESVNCSCNRGYGIGSSMDRWQPCLHTKSFNSSLSLKPPSPHPLSFSFRHKPSTLRHATHYLPESHSLLHALHVSSRSGDTHLAKTVHATLLKHDEDTHLSNALISSYLKLGLFPHALRVFLSLPSPNVVSYTALISALSKSRRERHALALFLRMTRSHVPPNEYTYVAVLTACARILHSHLGLQVHAAALKTAHFDSTFVANALASLYAKCESFQAALKLFNQTRHRDIASWNTVISAAVQESLYDTAFRLFRDMQATDAFRVDDFTLSILLTACASLMEGQQVHAHAIKLGLETDLNVGNGLIGFYSKCGILDEVEWLFEGMRVRDVVTWTEMVTAYMEFGLVDLALKVFDEMPEKNSVSYNAVLSGFCQNGEGLEALELFIKMVEEGLELTDFSLTSGVDACGLLGDYKVSKQVHGFAVKFGFGSNGCVEAALLDMYTRCGRMVDAEKMFLRWELEEFSSVAWTSMICGYARNGRMEEAISLFHVGRSDGKLRMDEVAAASVLGLCGTVGHLDMGKQIHCHVVKCGLQSNMEVGNALVSMYFKCGNVDDAMRMFNDMPCTDVVSWNTLISGNLMLRQGDRALEVWVKMREEGIKPDQITFVLIISAYRQTNSNLVDDCRSLFDSMRAVYQIEPTSEHYASFISVLGRWGLLQEALQTINKMPFQPSALVWRSLLDGCRLHKNTMIGKWAAQNILSLEPKDPSTFILVSNLYSASGRWDRSEMVMENMREKGFRKHPAQSWIICQKKIHTFYPRDRSHPQEKDIYSGLEILILECLKLGYEPDTSFVLHEVEEHHKKTFLFHHSAKLAATYGILMTKPGKPIRVVKNILLCGDCHAFLKYASIVTKRDIFLRDSSGFHYFSNGQCSCKDCW 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0930 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Ssu4g0930 873 Gene3D Tetratricopeptide repeat domain 146 281 IPR011990 GO:0005515
Ssu4g0930 873 Gene3D Tetratricopeptide repeat domain 615 755 IPR011990 GO:0005515
Ssu4g0930 873 Gene3D Tetratricopeptide repeat domain 415 491 IPR011990 GO:0005515
Ssu4g0930 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 564 598 IPR002885 -
Ssu4g0930 873 PANTHER OS07G0172600 PROTEIN 394 474 - -
Ssu4g0930 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 703 737 IPR002885 -
Ssu4g0930 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Ssu4g0930 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Ssu4g0930 873 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 394 474 - -
Ssu4g0930 873 TIGRFAM PPR: pentatricopeptide repeat domain 538 563 IPR002885 -
Ssu4g0930 873 TIGRFAM PPR: pentatricopeptide repeat domain 232 258 IPR002885 -
Ssu4g0930 873 TIGRFAM PPR: pentatricopeptide repeat domain 361 394 IPR002885 -
Ssu4g0930 873 TIGRFAM PPR: pentatricopeptide repeat domain 330 359 IPR002885 -
Ssu4g0930 873 TIGRFAM PPR: pentatricopeptide repeat domain 464 487 IPR002885 -
Ssu4g0930 873 TIGRFAM PPR: pentatricopeptide repeat domain 130 164 IPR002885 -
Ssu4g0930 873 TIGRFAM PPR: pentatricopeptide repeat domain 566 599 IPR002885 -
Ssu4g0930 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Ssu4g0930 873 Pfam PPR repeat 302 328 IPR002885 -
Ssu4g0930 873 Pfam PPR repeat 538 560 IPR002885 -
Ssu4g0930 873 Pfam PPR repeat 435 455 IPR002885 -
Ssu4g0930 873 Pfam PPR repeat 641 664 IPR002885 -
Ssu4g0930 873 Pfam PPR repeat 102 122 IPR002885 -
Ssu4g0930 873 Pfam PPR repeat 464 487 IPR002885 -
Ssu4g0930 873 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 476 859 - -
Ssu4g0930 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 358 IPR002885 -
Ssu4g0930 873 Gene3D Tetratricopeptide repeat domain 492 614 IPR011990 GO:0005515
Ssu4g0930 873 Gene3D Tetratricopeptide repeat domain 282 414 IPR011990 GO:0005515
Ssu4g0930 873 PANTHER OS07G0172600 PROTEIN 476 859 - -
Ssu4g0930 873 Pfam E motif 683 744 IPR046848 -
Ssu4g0930 873 Pfam PPR repeat family 564 610 IPR002885 -
Ssu4g0930 873 Pfam PPR repeat family 127 176 IPR002885 -
Ssu4g0930 873 Pfam PPR repeat family 229 277 IPR002885 -
Ssu4g0930 873 Pfam PPR repeat family 358 405 IPR002885 -
Ssu4g0930 873 Pfam DYW family of nucleic acid deaminases 781 873 IPR032867 GO:0008270
Ssu4g0930 873 PANTHER OS07G0172600 PROTEIN 42 401 - -
Ssu4g0930 873 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 42 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0930 Ssu-Chr4 14805564 14808185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0930 77 873 Glycoside Hydrolase AT3G49170 36.777 1.33e-164 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0930 - - gmx:100784704 1485.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0930 4 14805564 14808185 Ssu4g0930 4 14805564 14808185 ECH