Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0909 ATGGAGGTTGGAGAAACAGAGAGAAAGAAGCTTCAAGAGCAGGTTCCTTGGGTCCCCACCACCCCTTTGAAGCCCATTCTTCCAAGACCAGTGCCGATCTGGACTCCTGGGGAGGGAAACCAGCTGTGCTTTCGTTCCAGTGGGATATCTGCATGTTTTGAATCCTCAGCAGGTGTAGAGATAAACAACGGGTCTCACCACCGGTCAGAACCTGCGGCTTTTGCCCATGACAATTCCAAAACTCGGGTACAGATATCCTTTGACGATATTTCCAGTTCAAGTAACGGCATTTCTGAACTTTTATCTCAGGCAGATACTCCATCGGCATATTCTAATGCAACACATGATGGATTTTTGAACCAATTTGTTCCTACATTTAACTCACGGTTCAACCCGACCTATAAATTACTTAGCCATCATCATCATCCCTCTCCTGAGCAACCGTTTGTCAATACTATCCACGACAATTACCAAGATCTTCAGGGTGCATCATACTTTGCTTACTGTAGCGAGGCATTTCCCCAAGTTGCCCCACCTCCAGATAATGCCATCACAGCAGAACTCAGACAAGATGAAACGGCACAAATGACTATGGAAGAGAGGGATCAAgagggagaagagaaaaatgtcCGAGCCACAAAGTGCAATAATTCACACAGCAAACTATATGACCCTGTTATGGAAGTTGCTGCTGTATCTACACCACACAAGGAGAATCACAACTACAAAAAGGAAATAAGCCATGATTTTGATCTGAATAAAACGCCTCAATCAAAaccaagaagaagaaagcacCGCCCCAAGGTCATAACAGAAGGCAAACCCAAAAGAACTGGGAAGCAGGTCACTACAAAGCCTGTCCAATCAAAAGAAAACTCAACTGACAAGAGGAAGGCAAGAAGGAAAGGATTGAACACAACTCCTCAAAGAGAAGTGACAGGAGAATGGACTAAACCACTGATGCCTGAATCTGCCAAAAAGACATGTAGAAGGTCCTTGAATTTTGACATAGGAGAACCAAGAGATAATTCTGCATGCCGAGAAAATGCAACTACACATTTTGGCAGAGACATCAGTGTGGTGGTTGAGGAAACACAGGCTCTAAATAACTGTGCACCATTACGAGAAGATACACAAGCCCCCATTACGTATCTTTCAAAATGCAATTCCCCTGTGGCCAAGCCAAATCCCAACTATATAGAGATTGGAAGCTCAAGGGGTTGGATGATTGCTCAAGATGGACATAAAAACAGTGCAAACATACTATCAAAATCAGTAGCACAATCAAGTCCAAATGACTCAAACAGcagtaaaagtaaaattttgagCACAGGGTCAGGATCACATGTAGTTGGTTCCAAGAGAAAACAATCTGGTATTGAACAGGCAGATAATAGCAGCATTAATCTGATTGGAGCACACTATAATGCAGTGCAGGCATACTACCAAAAGTACTTGGTTCAATTTCCAAATGTTCATAAAAAAAGGAGGAGTGAAAAGGGGAGAATTTCAAACACATCCTATACATCTTCCATGACTGCCACAAAAGATGTACAACTGTCAACATGCCCACAAGACGATGCTAGATCACATTCTTATGCATCAAGTCCCAACTGCTGGACTTCTGCTTCTGAATATAATGCAGCTGGAGTCCCAGCCATAATTACAGCTACAGAAAGAGCTATTCATGATAAACCTCAATCATTTGAGTACAACTTATCTTTAGGGCAGAGGAGGCCAACCAAAAGAAGATCAAGAGTCCCTACTAGAATTCATGATTGTGCTTTACTGACCATAACTAGAAACTGTGATACCAAACTAGCACTTACCGCAAAACAAACATGCAGTTCTGACAGACAAACATTTGGGGATGCAGAAAGACCACAGACATGCATTGATGCTTTAGTTGCAGAGATGCGAGCATCACTCACAAAAAAGAAACGAACTAGAAAGAGAAGTATTCCTGTCAGTTCAGCGTATTCTTGCACAAATGAAATGCAACAACGCCATAAAGTTGTGTTGGAAAATCATAGCATACCCTCACACAACTCATCAGATGTTGCTTCTGAAGAGATATGGAAAAACATACATACTGTGGATGTTTTAACAGAGCAATTTAGATGCCTAAACATATACAGAGAAGCCAGAGAGCTTGTGTTGCATGGGCAGAATATGCTTGTCCCTTATAACCAGcaaaatcaaaagaacaaaGGCCTTGTCCATGAATATGGCACCATGATTCCCTTTGAGGGACCATTTGATCCCATTAAAAAACAGCGCCCACGACCTAAAGTTGACCTTGATGAGGAGACTAATAGAGTGTGGAAGCTTCTACTGTTGGATATAAACAGTCATGGGATTGATGGAACAGATGAAGACAAGGCCAAATGGTGGGAAGAAGAACGAAATGTATTTCGTGGACGAGCAGACTCATTTATTGCACGGATGCATCTTGTACAAGGAGACAGACGCTTTTCTCAATGGAAGGGATCAGTTGTGGATTCCGTGATCGGAGTTTTCCTCACTCAAAATGTCTCGGACCATCTTTCCAGTTCTGCATTCATGTCCCTTGCTGCTCGATTTCCTCTAAGGTCAAGCAGTAAGTACAAAACATGCCACAGGGAAAGCACAAGTTTGATAGTCAACGAACCACAAGTGTGCATTGTGGAGCCAGAAGAAATTGAAAATCTGGATGAAAAAATATTGGATCAATCTGTTTGTGAATTGAATTCTTTGACAATAGACATCATTGGGCATTCTGAAGAAAGAGAAGCTGTTGACAGCAATGATTCCTGCAGAACTAATAGCAGCTTAATTGTTGTAACAGATGAATCAGACAGCAAATTGCTGGAATCAGCTCAAAGACATAATAGTGAACATAGTCCAGTGGAGAGTGGAGCAATTAGTGCCATGACTGGGGAAGGGCAAGAAAATTTATGCCGTGGGAGTGTTAGGATAGAGTTAAATGATGTATTTTCATCCCAATGCTCTGCCGTTACATCTCAAATATCAGGGGATTTTTCAATTGATCAAAATCCTGAAAAGATAGGATCATTCTCGGACAGCAACTCAGAAATAGAAGACCTGTCAAGTGCTGCCAAGtacaacatttattataacAGAACCTCTTTCAGTGAGCTTTTAGAAATGGCAAGTTCAACCATATTGCATGAAGTTAGCAGTCAAAGAAGCAAATCGACTGAGAACTTAAGCGATACATGTGGTCAATCTATAGACATGAAGCATGACAACCAGCTAGAAAACTTGGAAAAATCAAATGTTACTCAAGGCTCCTTAGAAGCATCCATCATCAATGAATATACTTTGAAAATAACCCCGAACTCAGGAGTACTTGAAGTTAACTGTTATGATCCTCTCAACATAGAAGTCCCATCAAGTGGCTCCTCAAAGGATAAAGATGAGAATGACAAGAGATCTACTTTTCCAACAGAGTCTGACAACCAAGCTGCAATTGTCCATTCTCAAGGACAAACTCAAGATCCAATGCAGAAAGCAAGGGAACTAGATTTTGGTGACCACAACTATGCTATGAGGAATGAAAACACTAAGATCGATTCTGCCCCTGCAAAATTAAGGAGCAGGGAGcgtggaaaagagaaaaagaataactTCGATTGGGATAGTTTAAGAATACAAGCACAAGCTAAGGcagggaaaagagaaaagacaGAGAACACCATGGACTCATTGGACTGGGATGCTGTAAGACGTGCAGATGTCAATGAAATTGCTGATACAATCAAAGAAAGGGGCATGAACAACATGCTTGCTGAACGTATTAAGAATTTCCTGAATCTATTGGTTGACATGCATGGGGGCATCGATCTTGAGTGGCTGAGAGATGTTCCACCTGACCGAGCAAAAGAATACTTGCTCAGCATACGGGGATTGGGATTGAAAAGTGTGGAGTGCGTACGACTCTTAACACTGCACCATCTTGCTTTCCCGGTGGACACAAATGTGGGACGTATAGCGGTACGATTGGGATGGGTACCTCTCCAGCCACTGCCAGAATCACTGCAGTTGCATCTTCTAGAATTGTACCCAGTGTTGGAGTCCATTCAAAAATATCTCTGGCCCCGGCTCTGCAAGCTAGACCAAAGAACAttGTATGAGCTGCATTACCAGCTGATTACATTTGGAAAGGTCTTCTGTACTAAAAGCAAACCAAATTGCAATGCATGCCCAATGAGAGGGGAATGCAGACATTTTGCAAGTGCTTTTGCAAGTGCAAGGCTTGCCCTGCCAGGACCAGAGCAGAAGAGTATAGTTATAACAACTGGAAACAATGCAACTGAGCAGCACCCATCACTAATCATCAATCAGCTGCCCTTGCTTCTCCCTGAAAATACAAACCAAGCAGAACTTCAACAAACAGAAGTGATCAGGCAACTAGAAGCAAAATCTGAAATCAATATTAGCCAACCTATTATTGAAGAGCCAGCAACTCCAGAGCCAGAATGCTCCCAAGTATCAGAAAATGATATAGAGGATACCTTAAATGAGGAATCGTGTGAAATTCCCACCATCAAACTAGACATAGAAGAGTTCACTTTGAACTTACAAAACTATATTCAAGAAAACATGGAACTTCAAGAAGGTGAAATGTCAAAGGCCTTGGTTGCTCTACATCCAGATGCTGCATGCATTCCTACACCAAAGCTGAAGAATGTGAGCCGGTTGCGAACAGAGCATTATGTTTATGAACTCCCTGATTCACATCCTCTTCTGAACGGGTGGGACAAGCGAGAACCTGATGATCCTGGCAAATACCTTCTAGCTATATGGACTCCAGGGGAGACAGCAGATTCTATACAGCTACCAGAAAGAAAATGCAGCTCTCAGGACTTTGGCCAGCTCTGTAATGAGAAGGAATGTTTTTCGTGCAACAGTTTCCGTGAAGCAAATTCACAGATAGTTCGAGGGACACTCCTGATACCATGTCGAACAGCTATGAGAGGGAGCTTTCCACTAAATGGTACCTATTTTCAAGTCAATGAGGTTTTCGCAGACAATGACTCAAGTCTTAACCCAATTAGTGTTCCCCGAAGTTGGATCTGGAACCTTGATAGGCGAACAGTGTATTTTGGAACCTCCATACCATCCATATTTAAAGGTTTATCAACACGAGAAATTCAACAATGCTTTTGGAGAGGTAAGATTTTTCTCCCAGGATGTAATCCTGCTTACTGTAATTGGATATCCTAG 5229 0.4119 MEVGETERKKLQEQVPWVPTTPLKPILPRPVPIWTPGEGNQLCFRSSGISACFESSAGVEINNGSHHRSEPAAFAHDNSKTRVQISFDDISSSSNGISELLSQADTPSAYSNATHDGFLNQFVPTFNSRFNPTYKLLSHHHHPSPEQPFVNTIHDNYQDLQGASYFAYCSEAFPQVAPPPDNAITAELRQDETAQMTMEERDQEGEEKNVRATKCNNSHSKLYDPVMEVAAVSTPHKENHNYKKEISHDFDLNKTPQSKPRRRKHRPKVITEGKPKRTGKQVTTKPVQSKENSTDKRKARRKGLNTTPQREVTGEWTKPLMPESAKKTCRRSLNFDIGEPRDNSACRENATTHFGRDISVVVEETQALNNCAPLREDTQAPITYLSKCNSPVAKPNPNYIEIGSSRGWMIAQDGHKNSANILSKSVAQSSPNDSNSSKSKILSTGSGSHVVGSKRKQSGIEQADNSSINLIGAHYNAVQAYYQKYLVQFPNVHKKRRSEKGRISNTSYTSSMTATKDVQLSTCPQDDARSHSYASSPNCWTSASEYNAAGVPAIITATERAIHDKPQSFEYNLSLGQRRPTKRRSRVPTRIHDCALLTITRNCDTKLALTAKQTCSSDRQTFGDAERPQTCIDALVAEMRASLTKKKRTRKRSIPVSSAYSCTNEMQQRHKVVLENHSIPSHNSSDVASEEIWKNIHTVDVLTEQFRCLNIYREARELVLHGQNMLVPYNQQNQKNKGLVHEYGTMIPFEGPFDPIKKQRPRPKVDLDEETNRVWKLLLLDINSHGIDGTDEDKAKWWEEERNVFRGRADSFIARMHLVQGDRRFSQWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLAARFPLRSSSKYKTCHRESTSLIVNEPQVCIVEPEEIENLDEKILDQSVCELNSLTIDIIGHSEEREAVDSNDSCRTNSSLIVVTDESDSKLLESAQRHNSEHSPVESGAISAMTGEGQENLCRGSVRIELNDVFSSQCSAVTSQISGDFSIDQNPEKIGSFSDSNSEIEDLSSAAKYNIYYNRTSFSELLEMASSTILHEVSSQRSKSTENLSDTCGQSIDMKHDNQLENLEKSNVTQGSLEASIINEYTLKITPNSGVLEVNCYDPLNIEVPSSGSSKDKDENDKRSTFPTESDNQAAIVHSQGQTQDPMQKARELDFGDHNYAMRNENTKIDSAPAKLRSRERGKEKKNNFDWDSLRIQAQAKAGKREKTENTMDSLDWDAVRRADVNEIADTIKERGMNNMLAERIKNFLNLLVDMHGGIDLEWLRDVPPDRAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEQKSIVITTGNNATEQHPSLIINQLPLLLPENTNQAELQQTEVIRQLEAKSEINISQPIIEEPATPEPECSQVSENDIEDTLNEESCEIPTIKLDIEEFTLNLQNYIQENMELQEGEMSKALVALHPDAACIPTPKLKNVSRLRTEHYVYELPDSHPLLNGWDKREPDDPGKYLLAIWTPGETADSIQLPERKCSSQDFGQLCNEKECFSCNSFREANSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADNDSSLNPISVPRSWIWNLDRRTVYFGTSIPSIFKGLSTREIQQCFWRGKIFLPGCNPAYCNWIS 1742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0909 1742 Coils Coil 1521 1541 - -
Ssu4g0909 1742 Gene3D Hypothetical protein; domain 2 1221 1319 - -
Ssu4g0909 1742 MobiDBLite consensus disorder prediction 241 257 - -
Ssu4g0909 1742 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 1169 1732 IPR044811 GO:0019104|GO:0035514|GO:0080111
Ssu4g0909 1742 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 1 289 IPR044811 GO:0019104|GO:0035514|GO:0080111
Ssu4g0909 1742 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 288 1156 IPR044811 GO:0019104|GO:0035514|GO:0080111
Ssu4g0909 1742 PANTHER ROS1, PUTATIVE-RELATED 1169 1732 - -
Ssu4g0909 1742 MobiDBLite consensus disorder prediction 1129 1155 - -
Ssu4g0909 1742 Gene3D - 1320 1408 IPR023170 -
Ssu4g0909 1742 MobiDBLite consensus disorder prediction 1134 1148 - -
Ssu4g0909 1742 CDD ENDO3c 1238 1356 IPR003265 GO:0006284
Ssu4g0909 1742 MobiDBLite consensus disorder prediction 1183 1210 - -
Ssu4g0909 1742 PANTHER ROS1, PUTATIVE-RELATED 1 289 - -
Ssu4g0909 1742 PANTHER ROS1, PUTATIVE-RELATED 288 1156 - -
Ssu4g0909 1742 MobiDBLite consensus disorder prediction 425 461 - -
Ssu4g0909 1742 Pfam Permuted single zf-CXXC unit 1615 1646 IPR028924 -
Ssu4g0909 1742 SMART endo3end 1218 1390 IPR003265 GO:0006284
Ssu4g0909 1742 SUPERFAMILY DNA-glycosylase 807 1413 IPR011257 GO:0003824|GO:0006281
Ssu4g0909 1742 MobiDBLite consensus disorder prediction 290 305 - -
Ssu4g0909 1742 Pfam RRM in Demeter 1649 1733 IPR028925 -
Ssu4g0909 1742 MobiDBLite consensus disorder prediction 241 309 - -
Ssu4g0909 1742 SMART ccc3 1391 1411 IPR003651 GO:0051539
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0909 Ssu-Chr4 14447644 14456560 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0909 - - gmx:100787368 2774.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0909 4 14447644 14456560 Ssu4g0909 4 14447644 14456560 ECH
Ssu4g0909 4 14447644 14456560 Ssu7g2527 7 49584526 49585573 PCT