Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0902 ATGAGAGGCATCGCATCTTGTTACAACGAACATGCCATTAGAGTGTCCGATTCATATTGCTCAAGGCCTTCAAACCAGGCCTATCTCTGTCCAAAAATGAACACTTCCACCAGAGATTCAGTCACCTGCATGTACAACGTCAACCTTATCTCATCGCAAAAACAACTCTTCATCACACTAACTTGGGCCAAGAAACTCTTGGGCCAGGGCTTCACCATAACCATCGCCAATTCCCAATATTCTCCCTCCAAATTCAACGCGAGGCAATTGAGAAAGAACAAAGGCAACGAAACATTCCAATCCCACAACTCCGAAATCCAAGTCTTGTGGGATCTCTCCGTTGCCAAGTACGAGGGAGGGCCAGAGCCGGTTGGCGGGTTTTACGTCGTCGTTTTGGTGGATTCCGAACTGGGCCTACGCCTCGGTGACAAAAATCCAGTTGAAGAATTATCGGACTCGGACGTGAATTCAGCGAATTTCTCGATGGTTTCTAGGAGTGAGACGTTTTCCGGCACTGCCGCTTACGCAACGAGGGCGAAATTTTCTGAGACGGGAATCGCTCACGACATATTGATAAAGTGCGGCGCGGAGGAGGGAGGGTCCAAGAGTCACGTGTTGTCCGTGTGCGTGGACAAGAAGACAATGTTCCAGGTTAAGAGGCTCCGGTGGAATTTTCGTGGGaaccaaacaatttttgttGATGGTTTGGTCGTGGATATGATGTGGGATGTGCATGATTGGCTTTTCAATCCCAATTCTGCCTCGGCGGTGTTCATGTTCAGGACGAGGAGTGGCCTCGATAGCAGGTTATGGTTGGAGGAGAAGAGTTTGCACGCGCATAAGGAACAGGACAGAATTGGGTTCTCCTTGTTGATATGTGCTTGTAAGATCCCCGACTGA 900 0.4844 MRGIASCYNEHAIRVSDSYCSRPSNQAYLCPKMNTSTRDSVTCMYNVNLISSQKQLFITLTWAKKLLGQGFTITIANSQYSPSKFNARQLRKNKGNETFQSHNSEIQVLWDLSVAKYEGGPEPVGGFYVVVLVDSELGLRLGDKNPVEELSDSDVNSANFSMVSRSETFSGTAAYATRAKFSETGIAHDILIKCGAEEGGSKSHVLSVCVDKKTMFQVKRLRWNFRGNQTIFVDGLVVDMMWDVHDWLFNPNSASAVFMFRTRSGLDSRLWLEEKSLHAHKEQDRIGFSLLICACKIPD 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0902 299 Pfam Plant protein of unknown function (DUF868) 37 296 IPR008586 -
Ssu4g0902 299 PANTHER FAMILY PROTEIN, PUTATIVE (DUF868)-RELATED 1 297 - -
Ssu4g0902 299 PANTHER EXPRESSED PROTEIN 1 297 IPR008586 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0902 Ssu-Chr4 14295960 14296859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0902 1 296 EF-hand Containing Proteins AT5G28150 34.884 6.03e-55 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0902 - - pvu:PHAVU_001G186900g 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0902 4 14295960 14296859 Ssu4g0902 4 14295960 14296859 ECH