Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0891 ATGGTTTACACCATCTTGGGAATTCGATTTCCGGTTGTTCCTTCGCTGCACAACTCGAGCTTCCGTGTCGATCGCAGGACTGCatctctttccctttttctcAGAAAGAACTCCTCTCGGAAAACCCTTGCTGTAAAATCTTCCCACGATTCTGATTCCCTGTCTTCCGCAATTGCCGAATCTGATAAAGTACTTATTCCTCAAGATCAAGATAACTCTGCATCCTTGACAGATCAACTTGAAACTCCTGATATAACCTCAGAGGATGCACAGAACTTAGAGAATTTAACCATGGAAGATGAGGACAAATACAACATTAGTGAAGCAGCTAGCAGTTACAGACAGATTGAAGATGGGCAAGGTTCTGTTGTATCATCACTTGTAGATGTGAACATTCAGGCCAAGAAGACATCGATATCTGTTGGCAGAGAAGTAAAGATAGTAAGTGATGAAGCTAAACCTAAGATCATTCCCCCACCTGGCACTGGGCAGAAAATATATGAGATTGATCCATCTTTGCTAGCTCACCGTGAGCATCTTGATTTCCGTTATGGACAATACAAAAGATTGCGTGATGAAATTAACAAGCATGAAGGTGGTTTGGATGCATTTTCTCGTGGTTATGAAAATTTTGGCTTCACACGCAGTGCTACAGGCATTACTTACAGAGAGTGGGCACCTGTAGCTAAGTCAGCAGCATTAATTGGAGACTTCAACAATTGGAATCCAAATGCAGATGTAATGACCCGGAATGAGTTTGGTGTGTGGGAGATCTTCTTGCCGAACAATGTGGATGGTTCACCACCAATTCCTCATGGTTCTCGAGTCAAGATCCGCATGGATACTCCCTCTGGAATCAAGGACTCAATTCCTGCTTGGATCAAGTTTTCTGTACAGGCTCCTGGTGAAATTCCATATAGCGGAATATACTATGATCCCCCAGAAGAGgAAAAATATGTCTTCAAACATCCACAGCcaaagagaccaaaatcactTAGAATATATGAGTCACACATTGGAATGAGTAGTCCGGAGCCAAAAATAAACACATACGTCAATTTTAGAGATGATGTACTACCTCGCATTAAAAGGCTTGGCTATAATGCTGTTCAGATTATGGCTATCCAAGAACATTCTTATTATGCCAGCTTTGGGTACCATGTTACAAATTTCTTCGCACCTAGCAGCCGATTTGGAACTCCAGAGGAACTTAAGTCTCTGATAGACAGAGCCCATGAACTAGGTCTGCTTGTTCTGATGGATATTGTACATAGCCACGCATCAAATAATACATTGGATGGGCTGAACATGTTTGATGGAACTGATAGTCATTACTTCTATCCTGGGTCACGAGGTTATCATTGGATGTGGGATTCTCGTCTTTTTAACTATGGAAGCTGGGAAgtACTAAGGTTTCTACTTTCGAATGCAAGATGGTGGCTGGATGAATACAAGTTTGATGGGTTTCGATTTGATGGTGTTACATCAATGATGTACACTCATCATGGATTGCAGGTAGCATTTACTGGAAATTACAGCGAGTATTTTGGTTATGCAACTGATGTTGATGCTGTGGTTTACTTGATGCTGGCTAATGATGTCATTCATGGGCTCTTCCCTGAAGCTGTTACAATTGGTGAAGATGTCAGTGGAATGCCAACATTCTGCCTTCCTATACAGGATGGTGGGGTTGGCTTTGATTATCGCCTGCACATGGCCATTGCAGACAAGTGGATTGAGATTCTCAAGAAGAAAGATGAAGACTGGAAAATGGGTGATATTGTCCACTCACTTACAAACAGAAGGTGGCTGGAAAAATGTGTAGCTTATGCTGAAAGTCATGACCAGGCCTTGGTTGGTGACAAGACAATTGCATTTTGGTTGATGGACAAGGATATGTATGACTTCATGGCTTTAGACAGACCATCTACACCTCTTATAGATCGCGGTATAGCATTACACAAAATGATTAGGCTTATTACCATGGGCCTTGGTGGTGAAgggtatttgaattttatggggAATGAATTCGGCCATCCTGAGTGGATTGATTTTCCAAGGGGTGATCAACATCTTCCTACTGGCGCAATAGTTCCTGGGAATAACTACAGTTTTGATAAATGCAGGCGGAGATTTGACTTGGGGGATGCAGACTACCTAAGATATCGAGGGATGCAAGAATTTGATCAAGCCATGCAGCATCTAGAAGAAAAGTTTGGTTTCATGACTGCTGAGCACCAATATATTTCACGGAAAAATGAAGGTGACAGAATTATAGTCTTTGAAAGGGGCAAGCTCATCTTTGTCTTCAACTTTCATTGGACCAACAGCTATTCAGATTACAGAGTCGGCTGCTTAACCCCTGGGAAATATAAGATTGTCTTGGATTCAGATGATGCCTTGTTTGGGGGTTTCAGTAGGCTCAACCACGTTGCTGAGTACTTCACCTCTGAAGGATGGTATGATGACCGACCTCGATCCTTTCTTATCTATGCACCTTCTAGAACAGCAGTGGTTTATGCCCTTGCAGATGAAGTTGAACCAGCCAGTGCAGATGAAGTTGAACCAGAGCCAGTTGATCCTTGA 2586 0.4149 MVYTILGIRFPVVPSLHNSSFRVDRRTASLSLFLRKNSSRKTLAVKSSHDSDSLSSAIAESDKVLIPQDQDNSASLTDQLETPDITSEDAQNLENLTMEDEDKYNISEAASSYRQIEDGQGSVVSSLVDVNIQAKKTSISVGREVKIVSDEAKPKIIPPPGTGQKIYEIDPSLLAHREHLDFRYGQYKRLRDEINKHEGGLDAFSRGYENFGFTRSATGITYREWAPVAKSAALIGDFNNWNPNADVMTRNEFGVWEIFLPNNVDGSPPIPHGSRVKIRMDTPSGIKDSIPAWIKFSVQAPGEIPYSGIYYDPPEEEKYVFKHPQPKRPKSLRIYESHIGMSSPEPKINTYVNFRDDVLPRIKRLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPEELKSLIDRAHELGLLVLMDIVHSHASNNTLDGLNMFDGTDSHYFYPGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGYATDVDAVVYLMLANDVIHGLFPEAVTIGEDVSGMPTFCLPIQDGGVGFDYRLHMAIADKWIEILKKKDEDWKMGDIVHSLTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPLIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGDQHLPTGAIVPGNNYSFDKCRRRFDLGDADYLRYRGMQEFDQAMQHLEEKFGFMTAEHQYISRKNEGDRIIVFERGKLIFVFNFHWTNSYSDYRVGCLTPGKYKIVLDSDDALFGGFSRLNHVAEYFTSEGWYDDRPRSFLIYAPSRTAVVYALADEVEPASADEVEPEPVDP 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0891 861 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 2-1, CHLOROPLASTIC/AMYLOPLASTIC 15 846 - -
Ssu4g0891 861 Gene3D - 744 849 IPR013780 -
Ssu4g0891 861 CDD AmyAc_bac_euk_BE 315 730 - -
Ssu4g0891 861 SUPERFAMILY Glycosyl hydrolase domain 745 843 - -
Ssu4g0891 861 CDD E_set_GBE_euk_N 218 311 - -
Ssu4g0891 861 SUPERFAMILY (Trans)glycosidases 334 720 IPR017853 -
Ssu4g0891 861 Gene3D Immunoglobulins 206 318 IPR013783 -
Ssu4g0891 861 Pfam Alpha amylase, catalytic domain 359 431 IPR006047 GO:0005975
Ssu4g0891 861 SUPERFAMILY E set domains 204 313 IPR014756 -
Ssu4g0891 861 Gene3D Glycosidases 170 739 - -
Ssu4g0891 861 SMART aamy 349 709 IPR006047 GO:0005975
Ssu4g0891 861 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 15 846 IPR037439 GO:0003844|GO:0005978
Ssu4g0891 861 Pfam Alpha amylase, C-terminal all-beta domain 748 841 IPR006048 GO:0003824|GO:0005975|GO:0043169
Ssu4g0891 861 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 211 293 IPR004193 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0891 Ssu-Chr4 13985929 14011601 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0891 6 844 Glycoside Hydrolase AT5G03650 74.167 0.0 1303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0891 K00700 - gmx:100785968 1678.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0891 4 13985929 14011601 Ssu4g0891 4 13985929 14011601 ECH