Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0888 ATGGCATCGGCATTGGCGGGGGATGATTTGGCCGTATCAACGAGCAGTCGCTCGAGCTGGACGTCGGCGAGTTTCAGGGAGGCGTGGACGGCGGCGCCGGACGTGTTCAACGTGAGTGGTCGCCACACGCACGAGGATGACGAGCAAGAACTCAAGTGGGTCGCCATAGAGCGCTTGCCAACTTTTGAACGCATGAGAAAAGGTGTGCTCAAGCACGTGCTTGACGATGGACACGTGGTGCTCGATGAAGTCGATGTTGCCAACCTTCGTTTACACGACAAGAAGCTCTTAATCGACAGCATACTTAAGATTGTCGAGGAAGATAATGAGAAATTCCTACGCAGACTTAGAGATAGAGTCGATAGAGTGGGGATTGAAATTCCCAAGATTGACGTTCGGTGCGAGAATTTATCTGTGGAGGGAGATGTGTATGCTGGGAGTAGAGCACTTCCTTCCCTGCTTAATACTACTCTCAATGCTTTTGAGAGCGTTCTGGGAATGTTTCACCTTGCACCGTCCAAGAAGAGGGAAATTCAGATTCTTAAAGATGTCAGTGGAATCGTCAAACCATCAAGGATGACTCTGCTTTTGGGTCCTCCATGTGCTGGGAAAACAACGTTGCTTTTGGCGCTTGCAGGGAAACTTGATCGTGATTTAAGGGCATCTGGGAGAATCACTTACTGTGGCCATGAGCTAAATGAATTTGTTGCACAAAAAACCTGTGCCTATATTAGTCAACACGACATTCACTATGGAGAAATGACAGTGAGAGAGACATTAGATTTTTCAGGACGTTGTCTAGGTGTTGGTACTAGGTATGAAGCGCTGGTGGAACTctcaaaaagggagagagaagCAGGAATAAAGCCAGACCCTGAGATTGATGCTTTCATGAAGGCTATAGCATTATCAGGCCAAAAAACCAGTTTGGTAACAGATTATGTTCTCAAGATACTTGGGTTGGATATCTGTGCTGACATTATGGTTGGAGATGAGATGAGAAGGGGCATCTCTGGTGGACAGAAGAAGCGAGTTACAACAGCCTTTAGTTCGTTTAACATTGGAGAGCAACTTGCTACTGAACTTGGGGTTCCCTATGATAAGAACCGAACCCACCCAGCTGCCTTAGTGAAAGACAAGTATGGTATATCAAACTGGGAGCTATTAAAGGCATGTTTTTCAAGAGAATGGCTACTTATGAAGCGCAgttcttttgtttatatattcaagACAACACAGATAACAATCATGTCTATTATTACATTTACCGTGTTCCTTAGAACAGAAATGTCAGTGGGCACTGTTCAAGATGGACAAAAATTCTTTGGAGCATTATTCTTTACTCTAATAAACGTGATGTTTAATGGGATGGCAGAACTAGCTATGACTGTGTTTAGGCTTCCTGTCTTTTACAAACAAAGGGATTTCATGTTCTATCCTGCATGGGCATTTGGTTTGCCTATATGGGTTCTCAAGATCCCTCTCTCCATTATGGAATCAGGGATATGGATTGTCCTTACATATTACACAATTGGGTTTGCTCCTGCTGCTAGCAGATTTTTCCGACAATTCTTGGCATTATTTGTCATTCATCAGATGGCGCTCTCTCTATTTCGGTTCCTTGCCGCAGCTGGTAGAACACTAGTTGTTGCTAATACACTGGGTACCTTGTCCTTGCAATTGATTTTTGTGCTAGGAGGTTTTATTGTTGCCAAAGATGACATTGAGCCATGGATGATATGGGGCTATTATATATCTCCTATGATGTATGGTCAGAATGCCATAGTAATGAATGAATTCTTAGATAAAAGATGGAACCCTCGAATTAATGCACCTACAATTGGAAAGATGCTTCTCAAATCTAGAGGCTTCTATACAGAGGAATATTGGTTTTGGATCTGCATTGGAGCCTTGCTTgggttttctcttctcttcaacCTCTTATTCATTGTTGCTTTAACTTATTTGAATCGTAAGTTATATCCTTCTGATTTTCAATcaGGTACAGACATGGCAGTGAAAAGTTCTTCAGAAGTTGGTAGTTCTTCGaaccaagaaccaagaggaatgGTTCTACCGTTTCAACCTCTTTCACTTGCATTCAATCATATTAGCTACTACGTAGATATGCCTGCAGCTATCCCTGGGGTTCCAAAAATCAAGGATGGTTATAATCCTGCCACATGGATGCTTGAAATCAGCTCTACTTCAACTGAGGCTCATCTTGAGGTAGATTTTGCAGAGATTTATGCCCAGTCTACCCTTTACCGGAGGAATCAAGAACTTATTGAGGAGTTCAGTACCCCAACACTAGATTCCAAGGACTTGTACTTCCCAACCAAATATTCCCAATCGTTTTTTGTTCAGTGCAAAGCTAACTTCTGGAAACAATATTGGTCCTACTGGAGATACCCTCAGTATAATGCTGTCCGATTCTTCATGACAATAGTCATTGGAATAATGTTTGGTCTGATATTCTGGAATAAGGCCAAAAGGATCCATAAACTACAAGATTTATTGAATCTTTTGGGTGCCATGTACGCTGCTATACTTTTTCTTGGAGCCATGAACGCTTCATCAGTGCAACCAGTTGTTGCCATTGAAAGAACTATCTTCTATCGTGAAAGAGCAGCAGGGATGTACTCGGCATTGCCCTATGCATTTGGCCAGGTGGCAATAGAGGCAATTTATAATGCAATTCAAACAGCCATTTACTCTCTTATCCTTTACTCCATGATTGGGTTTGATTGGAAGGCAGCAAACTTCTTTTGGTTCTACTACTATATATTAATGTGCTTTATCTACTTCACGCTGTATGGGATGATGATTGTAGCACTAACACCGGGTCACCAAGTTGCTGCCATTTGTATGTCCTTCTTCTTGAGTTTCTGGAACTTGTTCTCTGGCTTTATCATTCCTAGGACGGTAAGTGGTTTGTCATTTTGA 2946 0.4131 MASALAGDDLAVSTSSRSSWTSASFREAWTAAPDVFNVSGRHTHEDDEQELKWVAIERLPTFERMRKGVLKHVLDDGHVVLDEVDVANLRLHDKKLLIDSILKIVEEDNEKFLRRLRDRVDRVGIEIPKIDVRCENLSVEGDVYAGSRALPSLLNTTLNAFESVLGMFHLAPSKKREIQILKDVSGIVKPSRMTLLLGPPCAGKTTLLLALAGKLDRDLRASGRITYCGHELNEFVAQKTCAYISQHDIHYGEMTVRETLDFSGRCLGVGTRYEALVELSKREREAGIKPDPEIDAFMKAIALSGQKTSLVTDYVLKILGLDICADIMVGDEMRRGISGGQKKRVTTAFSSFNIGEQLATELGVPYDKNRTHPAALVKDKYGISNWELLKACFSREWLLMKRSSFVYIFKTTQITIMSIITFTVFLRTEMSVGTVQDGQKFFGALFFTLINVMFNGMAELAMTVFRLPVFYKQRDFMFYPAWAFGLPIWVLKIPLSIMESGIWIVLTYYTIGFAPAASRFFRQFLALFVIHQMALSLFRFLAAAGRTLVVANTLGTLSLQLIFVLGGFIVAKDDIEPWMIWGYYISPMMYGQNAIVMNEFLDKRWNPRINAPTIGKMLLKSRGFYTEEYWFWICIGALLGFSLLFNLLFIVALTYLNRKLYPSDFQSGTDMAVKSSSEVGSSSNQEPRGMVLPFQPLSLAFNHISYYVDMPAAIPGVPKIKDGYNPATWMLEISSTSTEAHLEVDFAEIYAQSTLYRRNQELIEEFSTPTLDSKDLYFPTKYSQSFFVQCKANFWKQYWSYWRYPQYNAVRFFMTIVIGIMFGLIFWNKAKRIHKLQDLLNLLGAMYAAILFLGAMNASSVQPVVAIERTIFYRERAAGMYSALPYAFGQVAIEAIYNAIQTAIYSLILYSMIGFDWKAANFFWFYYYILMCFIYFTLYGMMIVALTPGHQVAAICMSFFLSFWNLFSGFIIPRTVSGLSF 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0888 981 Pfam ABC-2 type transporter 789 975 IPR013525 GO:0016020|GO:0140359
Ssu4g0888 981 Pfam ABC-2 type transporter 388 600 IPR013525 GO:0016020|GO:0140359
Ssu4g0888 981 Pfam ABC transporter 181 348 IPR003439 GO:0005524
Ssu4g0888 981 Pfam Plant PDR ABC transporter associated 608 657 IPR013581 -
Ssu4g0888 981 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 348 IPR027417 -
Ssu4g0888 981 PANTHER ATP-BINDING CASSETTE TRANSPORTER 21 347 - -
Ssu4g0888 981 PANTHER ATP-BINDING CASSETTE TRANSPORTER 713 975 - -
Ssu4g0888 981 PANTHER ATP-BINDING CASSETTE TRANSPORTER 347 713 - -
Ssu4g0888 981 Pfam ABC-transporter N-terminal 106 155 IPR029481 -
Ssu4g0888 981 Gene3D - 169 353 IPR027417 -
Ssu4g0888 981 PANTHER ABC TRANSPORTER G FAMILY MEMBER 34-RELATED 21 347 - -
Ssu4g0888 981 PANTHER ABC TRANSPORTER G FAMILY MEMBER 34-RELATED 713 975 - -
Ssu4g0888 981 PANTHER ABC TRANSPORTER G FAMILY MEMBER 34-RELATED 347 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0888 Ssu-Chr4 13922014 13929433 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0888 K08711 - cpap:110819220 885.945