Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0887 ATGGAGGTCTCAGACGACGACGACCAGCACGTTATCCTGCTTTGCACTAacactgatccaatccaaacaaCGAAAACCCTAAACGATGAGATTCTCGTGTCCACCACAGATATCCTCGCTTGGGATTTCCCGACGATTCTCGCTTTCCCGACGATTAAAGTTCAGGCACATCGCAATAGGCTCATTGAACAATCTCTGTATTTCCGCGGCCTCCTCAGCGGGAGCTTCAGTGAATCGTGCTTGGGCTCTATCACTATCAATTGGAATGTGAGCGAATTTTTGCAAATTCTTATGCATATGTGTGGCTGCGTATTGGATATTACGCTGGATAATTTCCTCCCTCTTTATgagGGTGCGCTTTATTTTGGAGTGGAGACTCTTCTCTGGAAGTGTGAGACGTGGCTTTCTGAGGTACTCTCACCCAACGGGTTTCAATCAACTCAAATACAAATGGAGGACTTGATCCAAATTTGGAAATTTGGCTCTGATCGtgCAAGTGACTTTATCCTGCACTTATGTATGGGCTACCTGGCAAGAAATTTTATGTGGGCAAAGCATAGcaaattttttggaaaacttCCATATGACCTGCTGTTATCTTCAGTGAAGCACCCTCATTTGACTGTTGACAGTGAGCTACATCTTTCTGATGCACTTCTTCTCTGGCTTGAAAGTAACTTGGAAAATTTGGAGAGGCCAAGCAAAGCTGAAGACAACTACAATGGAATTTTGAAACAAATTCGTGTAGGCCTTTTGCCTTTGTGGTTTGCTCTAGAAAGTGAACCTTTCTGGTTGCCCGCAGATAACATCAACAATACTTCTTCTGTCGCTCATCCCTCAATCGTATTTAACAGATCCCATGCAAAGAAGATTATAAAACAGTTCTTTATTAATTGTGGACATCCTATAAGAGATAAATGTGTGTTCCCACAAAAACTGACAGAAACCTTTACCTTTGAAGCAGTTCAGGAGGTGGATATCTCCAAGTGTCGAAATTTGCTTATTGAGCATGCTGTTGATTGCTTCCGCAAGTCCTTTCCTTCTTTAAGAATATTGAAAGCAGCTTATCTTTTGAACATTGGGACAACCAGTTTCCTTCAATTATTGGAGAAATGTCCCATGGTCTGTGAAATTGACTTGACTGTTGATATTACCCCACTGATACCAGCATTAGTTACAGTTTTATCTCCTAGTCATACTGCGATACCACCGGTACCAGAGAAGACCTCTAGTGTTAAATATAAAGCAGTGCAAATCATgtcatttaatgaatttggaCCTCCTCTTTCTAACGTTACAAAACTCATATTGGAAGGAAGAACTGATGTCAGTGATTTGGGTCTCCGCTATATCTCCAAATTATGTGTTTCCTTGCGTCACCTGAATATTAAAGGATGCATTTCTGTCACCGATATTGGCATATCAGATCTCATATCCACATGTAGAAAACTTAATTCTATTGTGGTTTGTGATACTTCATTTGGGATAAGTTCAGTTCAAGCTCTTTGCTCAGCTATTTCTGATAGTGGCAACTTCGCCTCTCTACATTCTAGGGATAAATGTTTGAATTCTGTGGTGTCTAATTTTGAAACACTGCATATGGGTGGCTGCAGGGGTGTTTGTGAGTCATCTCTACTAGAACTTATGTCTCAAACACAAGTTTTGAAAAGTTTATGCCTGAGAGGGACTGACCTGGTTGACCAGGCACTGTATAATTTTGTTGGTTCTTCCTTGGAGATGCTTGATGTTTCAAATACCAAGGTTTCTGGGGCTGCATTAGCTTATGTTATTCATGGAAATCCAAGTTTAAAGTGTCTGAAAGCAAGAGGCTGTCGAAATTTGTTTCCAGGAAACAATTGTATTGAAAAGAGAGAATCTAGCATTTCCTCTTTGCATGAAAAACTACTTGCTGAGTTAGGGAAAATATGTAGATTGGAAGAAATTGAATTTGGATGGGGCTTTTCTTCCCTCTCTTTGAGTGCTCTGGAACCTGCATTGATGTCATTAAAGACCATCAATATAGGTTTAGGTGGAATGTTAGGTGAAGATGCTTTGAAACGATTGCCTGCAATCTGTCCCTTGCTAGAAACAATAATCCTTCATTTTCAGgTAATATCTGATATAATTGTGATGAACTTTGTTACATCCTTGAAAAACTTGCAAGTATTAGCTCTGTGCTATTGTTTTGGTGATATATCCATGTCAAGCTTCAAATTCCCTATGCAAAATCTAAGCAAGTTGAGGTTTGAAAGAGTAACCCCATGGATGAAAAATGATGATTTGGTTATTCTAACTCAAAACTGCAGAAATTTGGTTGAGCTTTCATTGCTAGGGTGTCCTCTTCTTGACCCAGATTCTCTACAGATAATTTCATGTGGATGGCCAGGCTTGGTCTCTATCCATTTAGAGGACTGTGGAGAAGTAACAGCTAATGGGGCTTTTGctcttcttgactgcaaagctCTTGAAGATATCCTACTGCGTCATAATGGCCCTGGGCTACACAGAAACTTCATTTGTTATGCTGCTTCAGAGGTTGCActttgcttatattttttttttttttttttttggttttgtaaatGTTGGGAACTTGATATTAGATGTTGTATCTTCTGTCATAACTAA 2628 0.3836 MEVSDDDDQHVILLCTNTDPIQTTKTLNDEILVSTTDILAWDFPTILAFPTIKVQAHRNRLIEQSLYFRGLLSGSFSESCLGSITINWNVSEFLQILMHMCGCVLDITLDNFLPLYEGALYFGVETLLWKCETWLSEVLSPNGFQSTQIQMEDLIQIWKFGSDRASDFILHLCMGYLARNFMWAKHSKFFGKLPYDLLLSSVKHPHLTVDSELHLSDALLLWLESNLENLERPSKAEDNYNGILKQIRVGLLPLWFALESEPFWLPADNINNTSSVAHPSIVFNRSHAKKIIKQFFINCGHPIRDKCVFPQKLTETFTFEAVQEVDISKCRNLLIEHAVDCFRKSFPSLRILKAAYLLNIGTTSFLQLLEKCPMVCEIDLTVDITPLIPALVTVLSPSHTAIPPVPEKTSSVKYKAVQIMSFNEFGPPLSNVTKLILEGRTDVSDLGLRYISKLCVSLRHLNIKGCISVTDIGISDLISTCRKLNSIVVCDTSFGISSVQALCSAISDSGNFASLHSRDKCLNSVVSNFETLHMGGCRGVCESSLLELMSQTQVLKSLCLRGTDLVDQALYNFVGSSLEMLDVSNTKVSGAALAYVIHGNPSLKCLKARGCRNLFPGNNCIEKRESSISSLHEKLLAELGKICRLEEIEFGWGFSSLSLSALEPALMSLKTINIGLGGMLGEDALKRLPAICPLLETIILHFQVISDIIVMNFVTSLKNLQVLALCYCFGDISMSSFKFPMQNLSKLRFERVTPWMKNDDLVILTQNCRNLVELSLLGCPLLDPDSLQIISCGWPGLVSIHLEDCGEVTANGAFALLDCKALEDILLRHNGPGLHRNFICYAASEVALCLYFFFFFFWFCKCWELDIRCCIFCHN 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0887 875 Gene3D Ribonuclease Inhibitor 312 508 IPR032675 -
Ssu4g0887 875 Gene3D - 175 273 - -
Ssu4g0887 875 SUPERFAMILY POZ domain 50 136 IPR011333 -
Ssu4g0887 875 CDD BTB_POZ_ZBTB_KLHL-like 51 122 - -
Ssu4g0887 875 Gene3D Ribonuclease Inhibitor 509 870 IPR032675 -
Ssu4g0887 875 Gene3D Potassium Channel Kv1.1; Chain A 45 162 IPR011333 -
Ssu4g0887 875 Pfam BTB And C-terminal Kelch 155 256 IPR011705 -
Ssu4g0887 875 SMART LRR_CC_2 768 793 IPR006553 -
Ssu4g0887 875 SMART LRR_CC_2 429 454 IPR006553 -
Ssu4g0887 875 SMART LRR_CC_2 455 480 IPR006553 -
Ssu4g0887 875 SMART LRR_CC_2 526 551 IPR006553 -
Ssu4g0887 875 SMART LRR_CC_2 794 819 IPR006553 -
Ssu4g0887 875 SUPERFAMILY RNI-like 429 831 - -
Ssu4g0887 875 PANTHER UNCHARACTERIZED 60 820 - -
Ssu4g0887 875 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN FBL11 60 820 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0887 - - adu:107493902 1126.31