Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0874 ATGGCCTCTCTAGTCAACAACGCTCACGGCGGCGTCAACGGTGTTCTCGGAAACGCAGAGAAGCTCATTATCGATACCGACCCCGGGATCGATGATAGCATGGCCATTTTGATGGCTTTTCAAACTCCAGAGGTGGAGGTTCTGGGTTTGACATCCATCTTTGGTAATACGACCACCGAAGTTGCCACGCGCAATGCTTTGCTTTTGTGTGAGATCGCAGGCCGTGAAAATGTTCCAGTTGCACAGGGCAGCCCTGAGCCATTGAAGGGTGGAGAGCCTCGTGTTGCTGATTTTGTTCATGGTGAAGATGGACTAGGGAACACATTCCTACCCCCACCTAAAGCTAAGAAAATTGAGAAGAGTGCTAGTGAGTTTTTGGTTGAGAAGGTCTCTGAATATCCTGGTGAAGTATCTGTGCTAGCACTTGGACCACTAACAAATTTGGCTTTGGCAATCAAAAGAGATTCTTCATTTGCAAGCAAAGTGAAGAGAATGGTTATACTTGGTGGTTCATTCTTTGCCTTGGGGAATGTGAACCCCGCTGCAGAAGCAAATATCTATGGAGACCCAGAAGCCGCAGATACTGTGTTTACCTCTGGGGcaaatattgttgttgttggaataAACATTACAACCCAAGTCAAATTCACAGATGCTGATCTCCTTGAACTGAAGGAATCTAAAGGAAAGTATGCTCCTCTCTTGAGTGACATGTGCAAATTCTATAGGGACTGGCATGTAAAATCTGACGGTGTCCGTGGAATTTTCCTCCACGATCCTGTCAGTTTTATGGCAGTTGTTCGTCCAGATCTTTTCACATACAAGAAGGGGGTAGTGAGGGTAGAGACACAAGGCATCTGTGTGGGGCATACACTTATGGACCAAGGATTGaaaaaATGGAATACGAGCAACCCATGGACGGGTTATTCTCCTGTTTCAGTTGCTTGGACTGTGAATGTCGAGGAAGTTCTTAATTATATCAGGGAGCTATTGATGAAACCCTGA 1005 0.4507 MASLVNNAHGGVNGVLGNAEKLIIDTDPGIDDSMAILMAFQTPEVEVLGLTSIFGNTTTEVATRNALLLCEIAGRENVPVAQGSPEPLKGGEPRVADFVHGEDGLGNTFLPPPKAKKIEKSASEFLVEKVSEYPGEVSVLALGPLTNLALAIKRDSSFASKVKRMVILGGSFFALGNVNPAAEANIYGDPEAADTVFTSGANIVVVGINITTQVKFTDADLLELKESKGKYAPLLSDMCKFYRDWHVKSDGVRGIFLHDPVSFMAVVRPDLFTYKKGVVRVETQGICVGHTLMDQGLKKWNTSNPWTGYSPVSVAWTVNVEEVLNYIRELLMKP 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0874 334 SUPERFAMILY Nucleoside hydrolase 20 331 IPR036452 GO:0016799
Ssu4g0874 334 Gene3D - 16 334 IPR036452 GO:0016799
Ssu4g0874 334 PANTHER URIDINE NUCLEOSIDASE 1 17 334 - -
Ssu4g0874 334 Pfam Inosine-uridine preferring nucleoside hydrolase 22 324 IPR001910 GO:0016799
Ssu4g0874 334 PANTHER INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE 17 334 IPR023186 -
Ssu4g0874 334 CDD nuc_hydro_CaPnhB 21 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0874 Ssu-Chr4 13711523 13714341 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0874 K01240 - gmx:100818908 601.668