Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0872 ATGATGGGAAAATGTAGCAAGTCCCTCATGGCCTTCCCAATCCTCCTACACACCCTATGCTTCCTTTTGTTCCCACAGCCCCTACTTTCTCAGGAGAATCATTTTGTTCGTCAGCCTGCTGGTCAACTCATCATCACTCCCCACCAACGCTACAATTCGGACCCCCAACAGGTGCACATTTCATTGATGGGCAAAGAGAATATGAGCGTGTCGTGGATAACCgaagacaagcacacaaaaTCTGTGGTGGAGTATGGGACAAAGTCGGGGGAATATAGCGCAAAAGCAACGGGGGAGCATACCTCGTAccaatattttttctacaaCTCCGGCAGGATCCACAACGTTGTGATTGGGCCTTTGCAGCCCAGTACCACTTACTTCTACAGGTGCGGAGGGTCGGGCCCTGAGTTTTCCTTCAAGACACCTCCACCCAAGTTGCCCATTGAATTTGTCATCGTTGGTGACTTGGGACAAACTGAATGGACTGCATCAACCTTAAAACACGTTGACAGCAGCGACTACGACATGTTCTTGTTACCGGGAGATCTATCCTACGCGGACTCCCAACAACCCTTGTGGGACTCCTTTGGTCGTTTGGTAGAGCCATATGCTAGTAAAAGACCATGGATGGTTACCGAAGGCAACCATGAGATTGAGATTTTTCCCATTATCTACCCACAAGGCTTCAAAGCCTACAATGCTCGCTGGACCATGCCCTTCCAACAAAGTGGTTCCACCTCAAACCTCTATTACTCCTTCGAGGTTGCCGGCACCCACATCATCATGCTAGGTTCCTACACTGATTTTGACGCCCAATCACAACAATACACGTGGCTTCAATCCGACCTCACCAACATTGATAGGGTCAAGACACCTTGGGTGATTGCGCTGTTGCATGCACCTTGGTACAATACTAATGAGGCACACCAAGGGGAAGGCGAATCCATGAGACAAGCCATGGAGGAATTACTTTATAATGCACGCGTTGACTTGGTTTTCGCTGGCCATGTTCATGCATATGAACGCTTCACTCGAATTTACGACAATAAGGCTGATTTGTGTGGACCCATGTACGTGACAATTGGAGATGGAGGAAACAGCGAGGGACTTGCGTTAAAGTTTAAGAACCCTCCAAGCCCACTCTCGTTGTATCGAGAGCCAAGTTTTGGACATGGAAGGTTGCGAATACTAAATGAAACACATGCACATTGGTCATGGCACCGAAACAATGACACTGATGCAGTTATAGCTGATGGTATTTGGATAGAGAGTTTAAGCAGCTCGAAAGCATGCTCGAAGACACCAGACCAACGAGATCATGCTGCTAAGGAAGAGCTATAA 1344 0.4695 MMGKCSKSLMAFPILLHTLCFLLFPQPLLSQENHFVRQPAGQLIITPHQRYNSDPQQVHISLMGKENMSVSWITEDKHTKSVVEYGTKSGEYSAKATGEHTSYQYFFYNSGRIHNVVIGPLQPSTTYFYRCGGSGPEFSFKTPPPKLPIEFVIVGDLGQTEWTASTLKHVDSSDYDMFLLPGDLSYADSQQPLWDSFGRLVEPYASKRPWMVTEGNHEIEIFPIIYPQGFKAYNARWTMPFQQSGSTSNLYYSFEVAGTHIIMLGSYTDFDAQSQQYTWLQSDLTNIDRVKTPWVIALLHAPWYNTNEAHQGEGESMRQAMEELLYNARVDLVFAGHVHAYERFTRIYDNKADLCGPMYVTIGDGGNSEGLALKFKNPPSPLSLYREPSFGHGRLRILNETHAHWSWHRNNDTDAVIADGIWIESLSSSKACSKTPDQRDHAAKEEL 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0872 447 CDD MPP_PAPs 148 425 IPR041792 -
Ssu4g0872 447 Gene3D - 146 433 IPR029052 -
Ssu4g0872 447 Pfam Purple acid Phosphatase, N-terminal domain 55 142 IPR015914 GO:0003993|GO:0046872
Ssu4g0872 447 Pfam Iron/zinc purple acid phosphatase-like protein C 356 416 IPR025733 -
Ssu4g0872 447 Gene3D - 54 145 - -
Ssu4g0872 447 Pfam Calcineurin-like phosphoesterase 151 341 IPR004843 GO:0016787
Ssu4g0872 447 PANTHER PURPLE ACID PHOSPHATASE 2 437 - -
Ssu4g0872 447 SUPERFAMILY Metallo-dependent phosphatases 148 413 IPR029052 -
Ssu4g0872 447 PANTHER ACID PHOSPHATASE RELATED 2 437 IPR039331 GO:0003993
Ssu4g0872 447 SUPERFAMILY Purple acid phosphatase, N-terminal domain 48 144 IPR008963 GO:0003993|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0872 Ssu-Chr4 13673968 13679093 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0872 55 437 Miscellaneous Gene Families AT2G03450 26.087 2.30e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0872 K22390 - gmx:100819446 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0872 4 13673968 13679093 Ssu4g0872 4 13673968 13679093 ECH