Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0870 ATGGGGTGGCGAATGCGTGTGGCAGGGTTCTTGCTTTTGCTAATCATCGGAATCGTCGAACTCGATGCCGTTTATGGTTACATTCGACCACCGCCTCGTGAAACACTCTTTATTCAACATGCAGATCAGGACTCGCACTCGCCTCAACAGGTACATATATCTCAAGTGGGCCAAAACAAGATGAGGATATCGTGGATCACAGACAGCTCAACGCCAGCAAAGGTTGCGTACGGTCCATCTCCTTCGGCTAACGCGTTTTCTGCCACAGGGACTACCTCTTCGTACCGTTATCTTATCTACAAGTCCAGTGAAATTCACGACGTGGTAATTGGTCCCCTCAACCCCAACACGGTCTACTACTACCGTTTGGGTGACTCACTCTCTTCCCAAACATACAAGTTTAAAACCCCACCTTCTCAACTTCCGATCAAGTTTGCAGTAGTTGGAGATCTTGGACAGACGGATTGGAGTAGGTCAACCTTGGAGCACGTGGGCAAGTCAAACTATGACATGTTACTACTACCTGGTGACATATCTTATGCAGACTTGAACCAAAGTCTATGGGACTCTTTTGGTCGATTGGTTGAGCCATTTGCTAGCCAGCGTCCTTGGATGGTCACCCAAGGCAACCATGAGATCGAGACAATTCCGATGATTCACGAAACGCCATTCACAGCATATAATGCCAGGTGGCGCATGCCATTCGAAGAGAGTGCATCATACTCTAATCTCTACTATTCTTTCGATGTGGCTGGCATTCATGTCATCATGCTTGGCTCCTACACCGACTTTGACCCTACTTCTCCACAGTACAAATGGCTTCAAGGGGACTTGCGAAAGGTAAATCGGGGAAAGACTCCCTGGGTAGTCGTGTTGGTTCATGCCCCGTGGTACAACTCCAACACTGCTCATCAGGGTGAGCCTGAATCTGTTCAAATGAAAGCTACCATGGAAGATTTGCTCTACCAAGCCCGTGTTGATGCTGTTTTTGCAGGGCATGTCCATGCCTATGAACGCTTTACACGGGTTTATAAAGACAAAGCTAATAATTGTGCTCCAGTGCATATCACAATCGGGGATGGGGGTAATCATGAAGGCCTTGCTACCAAGTACATAGACCCTAAGCCAGCGGTATCATTATTCAGGGAGGCTAGCTTTGGACACGGTACATTTGAGGTAGTTAATGCGTCACATGCACTCTGGACATGGCATAAGAACGACAACGATGAAGCGGTTGTTAGTGATTCTATTTGGCTTACAAGTTTCTCCTCCAATCCTTCTTGTAAACAGTGA 1293 0.4733 MGWRMRVAGFLLLLIIGIVELDAVYGYIRPPPRETLFIQHADQDSHSPQQVHISQVGQNKMRISWITDSSTPAKVAYGPSPSANAFSATGTTSSYRYLIYKSSEIHDVVIGPLNPNTVYYYRLGDSLSSQTYKFKTPPSQLPIKFAVVGDLGQTDWSRSTLEHVGKSNYDMLLLPGDISYADLNQSLWDSFGRLVEPFASQRPWMVTQGNHEIETIPMIHETPFTAYNARWRMPFEESASYSNLYYSFDVAGIHVIMLGSYTDFDPTSPQYKWLQGDLRKVNRGKTPWVVVLVHAPWYNSNTAHQGEPESVQMKATMEDLLYQARVDAVFAGHVHAYERFTRVYKDKANNCAPVHITIGDGGNHEGLATKYIDPKPAVSLFREASFGHGTFEVVNASHALWTWHKNDNDEAVVSDSIWLTSFSSNPSCKQ 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0870 430 Pfam Calcineurin-like phosphoesterase 144 337 IPR004843 GO:0016787
Ssu4g0870 430 PANTHER ACID PHOSPHATASE RELATED 13 428 IPR039331 GO:0003993
Ssu4g0870 430 SUPERFAMILY Purple acid phosphatase, N-terminal domain 40 138 IPR008963 GO:0003993|GO:0046872
Ssu4g0870 430 Pfam Purple acid Phosphatase, N-terminal domain 48 136 IPR015914 GO:0003993|GO:0046872
Ssu4g0870 430 Gene3D - 47 139 - -
Ssu4g0870 430 PANTHER PURPLE ACID PHOSPHATASE 13 428 - -
Ssu4g0870 430 CDD MPP_PAPs 142 421 IPR041792 -
Ssu4g0870 430 SUPERFAMILY Metallo-dependent phosphatases 142 410 IPR029052 -
Ssu4g0870 430 Gene3D - 140 428 IPR029052 -
Ssu4g0870 430 Pfam Iron/zinc purple acid phosphatase-like protein C 352 412 IPR025733 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0870 Ssu-Chr4 13607531 13621733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0870 48 388 Miscellaneous Gene Families AT2G03450 27.295 1.13e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0870 K22390 - gmx:100790228 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0870 4 13607531 13621733 Ssu4g0870 4 13607531 13621733 ECH