Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0868 ATGGCCAATAAAGAGTTCAAAGTCCCGCCGGTGGCTTTCCCCACCGCCGGAAACCCCGCCGCGGCGGTCCCAAACCTCCAGCAGCGGCGCGTGCCAACGCCGCCGTTCCAACCGAATTCCGGCATCCCCTTCATGTCCTTCGACATAGGCTCCGCCGCGGCCTCCACCTCCTCGGGAGCAATCTACACCGGCCCGGCCGTGGGCGGCGGCTCCGCCAGCTTCGACGACGAGGAGCCCCTCCTCGACGAACTCGGGATCCACCCGGACCAAATCTGGAGCAAAATCAGATCCGTTCTGAACCCGTTCCGGGTCAACCACGCGGTCCACAAGGACTCGGATCTATCGGGCCCAATTCTCCTCTACATGGCCTTTTGCCTCTTCCAATTACTCGCGGGGAAGATCCAATTCGGCGTGATCTTGGGCTGGATCGTGGTCTCTTCCATCTTCCTATACGTCGTGTTCAACATGCTAGCCGGTCGAACCGGTAACCTCGACCTGCACACCTGCACCAGCGTCGTCGGTTACTGCATGTTGCCGGTGGTCATTTACTCTGCTCTCTCGCTTTTCTTACCGGTCGACGGGGTCATTCGGCTTTCGGTCGCTGCGGTTTTCGTGCTGTGGGCGATGAGGGCTTCTACGGGGCTCGTCGTTTCGCTCGCCGACGGCGGGGATGAACATCGCGGGTTGATAGCGTACGCGTCTTTCTTGATTTACACTCTGTTTTCGTTGCTTGTCATATTCTAG 744 0.5954 MANKEFKVPPVAFPTAGNPAAAVPNLQQRRVPTPPFQPNSGIPFMSFDIGSAAASTSSGAIYTGPAVGGGSASFDDEEPLLDELGIHPDQIWSKIRSVLNPFRVNHAVHKDSDLSGPILLYMAFCLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRTGNLDLHTCTSVVGYCMLPVVIYSALSLFLPVDGVIRLSVAAVFVLWAMRASTGLVVSLADGGDEHRGLIAYASFLIYTLFSLLVIF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0868 247 Pfam Yip1 domain 114 245 IPR006977 GO:0016020
Ssu4g0868 247 PANTHER GOLGI MEMBRANE PROTEIN YIP1 4 247 IPR045231 GO:0006888
Ssu4g0868 247 PANTHER PROTEIN YIPF 4 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0868 Ssu-Chr4 13587073 13587816 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0868 K20363 - gmx:100775605 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0868 4 13587073 13587816 Ssu4g0868 4 13587073 13587816 ECH