Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0867 ATGGCAAGATTGCCTTTAGAGCCTCTAATAGTTGGGAGAGTCATAGGAGAAGTTCTTGATTCTTTTACCACAAGCATAAAAATGACTGTGAGTTACAACAAGAAGCAAGTCTACAATGGGCATGAGCTCTTCCCTTCCACTATCAACACCAAACCCAAGGTTGAGATTGATGGTGGTGATATGAGGTCCTTCTTCACACTgATTATGACGGACCCGGATGTTCCTGGCCCTAGTGATCCTTATCTGAGAGAGCACTTGCACTGGATTGTGACAGACATTCCAGGCACAACAGATGCCACATTTGGCAAAGAGTTGGTGAGCTATGAGATCCCAAAGCCTAATATTGGGATCCATAGGTTTGTGTTTGTCCTGTTCAAGCAAAAGAGTAGGCAGTGTGTTACTCCACCTACTTCAACGGATCACTTCAACACACGCAAATTCGCAGCAGAGAATGACCTTGGCCTCCCTGTGGCTGCTGTCTACTTCAATGCACAGAGGGAAACGGCTGCAAGAAGACGCTAG 522 0.4598 MARLPLEPLIVGRVIGEVLDSFTTSIKMTVSYNKKQVYNGHELFPSTINTKPKVEIDGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDATFGKELVSYEIPKPNIGIHRFVFVLFKQKSRQCVTPPTSTDHFNTRKFAAENDLGLPVAAVYFNAQRETAARRR 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0867 173 CDD PEBP_euk 27 164 IPR035810 -
Ssu4g0867 173 Gene3D - 5 173 IPR036610 -
Ssu4g0867 173 Pfam Phosphatidylethanolamine-binding protein 49 162 IPR008914 -
Ssu4g0867 173 PANTHER PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 5 172 IPR035810 -
Ssu4g0867 173 ProSitePatterns Phosphatidylethanolamine-binding protein family signature. 65 87 IPR001858 -
Ssu4g0867 173 PANTHER PROTEIN TERMINAL FLOWER 1 5 172 IPR031114 GO:0003712|GO:0009910
Ssu4g0867 173 SUPERFAMILY PEBP-like 13 167 IPR036610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0867 Ssu-Chr4 13571297 13572658 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0867 K06910 - gmx:100791809 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0867 4 13571297 13572658 Ssu4g0867 4 13571297 13572658 ECH
Ssu4g0867 4 13571297 13572658 Ssu7g2567 7 50738315 50739595 PCT