Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0863 ATGGAGCACCTTCCTGTTGAAGTGATTGGTAATATATTATCTCTTCTTGGTTCTGCCCGGGATGTTGTGATTGCTTCTGCAACTTGCAAGAAATGGAGGGAAGCATGGCGCAGTCACCTATACAGTCTTTCATTCAATTATTGTGACTGGCCCCTCTATCATGACTTGACCTCTAATAGGTTGGAAATACTCATCACTCAGACAATCTTTGAAACCAAGGCACTGCAATTCTTGACCATTTTCATGGATGATGAGCACGAGTTCTCGGCCGCGCCGGTCATTGCTTGGCTTATGTATACTAGGGACTCCTTGCGCCAATTGTGCTACAATGTGAGGACAACCCCTAGTTTCAATATCATTGAAAAATGCAGCAGGCAGAGGTTGGAGGTGTTGACCTTGGCTCGCAATTCTATCACGGGTGTTGAGCCGAGTTACTTGAAGTTTCCTTGCTTGAAGTCGCTTTCGTTGAGCTTTGTTAGCGTCTCGGCGTTGGATTTGAGCCTTCTGCTGTCTGCCTGTCCAAAGCTTGAAACCTTGGCTATGGTTAGTCCGGAAATTGCAATGTCTGATTCGCAGGCTTCCGTGGAGCTCAGCACCGTTTCTTTGAAGGATTTCTTCATTGAATCGTTTAGTTCGGATAAGTTTACATTGGAGGCGGATTTACTTGAGAAACTTCATTTGAAAGATTGTACCTTTGAGGTTTTTGAGCTGATTGGAAAGGGAACATTGAAGGTGTTGAAAATTGATGATGTGAGTGTCATCCATCTTGATATTGGGGATAGTACAGAGAGCCTTGAGATTATAGATGTCTGTAACTTCACAATTATGTGgccaaaattttatcatatgatCTCAAAAGCATCCAAGTTATATAAGCTTCGGCTGTGGGGAGTTGTTTTTGATGACGAGGATGAGGTTGTTGATATAGAGACAGTTTCTGTCTGCTTTCCTCTGCTGATGCATTTGTCCTTAAGTTATGATTTAAGAGATGGAGTGCTTCATTATGGCTTGCAGGGTTTGTCTTGTTTGATGAATGTGGTGGTGTTAGAACTGGGATGGACTGTAATTAGTGATCTTTTCTCAGTATGGGTAGCTGGACTTTTGGAAGGATGTcccaatttgaaaaaattggtcATTTATGGTCTTGTTTCAGAGGTCAAAACACATGAAGAGTGCCAAATTCTTGCCAGATTCTCTGAATTCATTATTCAACTTGGAAGAAAATATGGGCATGTAAAGTTCGAGTTTGAATATGAGTAG 1260 0.4095 MEHLPVEVIGNILSLLGSARDVVIASATCKKWREAWRSHLYSLSFNYCDWPLYHDLTSNRLEILITQTIFETKALQFLTIFMDDEHEFSAAPVIAWLMYTRDSLRQLCYNVRTTPSFNIIEKCSRQRLEVLTLARNSITGVEPSYLKFPCLKSLSLSFVSVSALDLSLLLSACPKLETLAMVSPEIAMSDSQASVELSTVSLKDFFIESFSSDKFTLEADLLEKLHLKDCTFEVFELIGKGTLKVLKIDDVSVIHLDIGDSTESLEIIDVCNFTIMWPKFYHMISKASKLYKLRLWGVVFDDEDEVVDIETVSVCFPLLMHLSLSYDLRDGVLHYGLQGLSCLMNVVVLELGWTVISDLFSVWVAGLLEGCPNLKKLVIYGLVSEVKTHEECQILARFSEFIIQLGRKYGHVKFEFEYE 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0863 419 Pfam F-box-like 2 41 IPR001810 GO:0005515
Ssu4g0863 419 Gene3D Ribonuclease Inhibitor 40 187 IPR032675 -
Ssu4g0863 419 PANTHER F-BOX/LRR-REPEAT PROTEIN 1 417 - -
Ssu4g0863 419 SUPERFAMILY RNI-like 55 381 - -
Ssu4g0863 419 Gene3D - 2 39 - -
Ssu4g0863 419 Gene3D Ribonuclease Inhibitor 188 396 IPR032675 -
Ssu4g0863 419 SUPERFAMILY F-box domain 1 67 IPR036047 GO:0005515
Ssu4g0863 419 PANTHER F-BOX PROTEIN-LIKE 1 417 - -
Ssu4g0863 419 SMART fbox_2 4 47 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0863 Ssu-Chr4 13512898 13514157 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0863 - - gmx:100792331 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0863 4 13512898 13514157 Ssu4g0863 4 13512898 13514157 ECH