Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0859 ATGGAGTTGAAAGAGATTCAGAGACTTGAAGGTCACACCGATAGGGTTTGGAGCTTGGATTGGAACCCGGCCACCGGCCACGCCGGTATCCCACTCGTCTTTGCTTCTTGCAGCGGCGACAAAACCGTCCGAATCTGGGAGCAGAACCTCTCCTCTGGCCTCTGGGCATGCAAGGCGGTTTTGGAAGAAACGCACACTCGAACTGTTCGATCTTGTGCTTGGTCACCGTCCGGGAAACTGTTGGCCACTGCAAGCTTCGATGCCACCACTGCCATTTGGGAAAATGTTGGTGGTGATTTTGAGTGCGTTTCTACGTTGGAGGGACATGAAAATGAAGTGAAGAGTGTGTGTTGGAACGCGTCTGGGACACTGCTTGCAACTTGTAGTAGAGATAAGTCTGTTTGGATATGGGAAGTGCTGCCTGGGAATGAGTTTGAGTGTGTGTCAGTGCTGCAAGGACACACGCAGGATGTGAAAATGGTGAAGTGGCATCCCACAGAGGATATCTTATTTTCATGTAGCTATGATAATAATGTTAAGGTTTGGGCTGATGAAGGTGACAGTGACGATTGGCAGTGCGTTCAAACACTTGGGGAACCCAATAACGGTCATACTGCCACTGTTTGGGCCCTCTCCTTCAATGCGAGTGGCGACAAAATGGTTACGTGTAGCGATGATCTTACCCTGAAGGTATGGGAAACAGAAAACATAGGGATGCAGTCTGGTGGTGGGTTTGCACCTTGGAGACATCTTTGCAGTCTTACAGGGTATCATGATCGGACAATTTTCTCAGTTCATTGGTCAAGGTAA 810 0.4914 MELKEIQRLEGHTDRVWSLDWNPATGHAGIPLVFASCSGDKTVRIWEQNLSSGLWACKAVLEETHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGDFECVSTLEGHENEVKSVCWNASGTLLATCSRDKSVWIWEVLPGNEFECVSVLQGHTQDVKMVKWHPTEDILFSCSYDNNVKVWADEGDSDDWQCVQTLGEPNNGHTATVWALSFNASGDKMVTCSDDLTLKVWETENIGMQSGGGFAPWRHLCSLTGYHDRTIFSVHWSR 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0859 269 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 106 139 - -
Ssu4g0859 269 Pfam WD domain, G-beta repeat 101 137 IPR001680 GO:0005515
Ssu4g0859 269 Pfam WD domain, G-beta repeat 5 46 IPR001680 GO:0005515
Ssu4g0859 269 Pfam WD domain, G-beta repeat 191 232 IPR001680 GO:0005515
Ssu4g0859 269 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Ssu4g0859 269 Pfam WD domain, G-beta repeat 146 182 IPR001680 GO:0005515
Ssu4g0859 269 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 94 - -
Ssu4g0859 269 ProSiteProfiles Trp-Asp (WD) repeats profile. 9 47 IPR001680 GO:0005515
Ssu4g0859 269 Gene3D - 32 269 IPR015943 GO:0005515
Ssu4g0859 269 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 151 182 - -
Ssu4g0859 269 ProSiteProfiles Trp-Asp (WD) repeats profile. 151 182 IPR001680 GO:0005515
Ssu4g0859 269 PANTHER WD40 PROTEIN CIAO1 2 269 IPR028608 GO:0016226|GO:0097361
Ssu4g0859 269 CDD WD40 5 268 - -
Ssu4g0859 269 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 2 269 - -
Ssu4g0859 269 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 9 47 - -
Ssu4g0859 269 ProSitePatterns Trp-Asp (WD) repeats signature. 125 139 IPR019775 -
Ssu4g0859 269 ProSitePatterns Trp-Asp (WD) repeats signature. 220 234 IPR019775 -
Ssu4g0859 269 ProSiteProfiles Trp-Asp (WD) repeats profile. 106 139 IPR001680 GO:0005515
Ssu4g0859 269 SUPERFAMILY WD40 repeat-like 3 268 IPR036322 GO:0005515
Ssu4g0859 269 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 1 269 IPR028608 GO:0016226|GO:0097361
Ssu4g0859 269 SMART WD40_4 54 94 IPR001680 GO:0005515
Ssu4g0859 269 SMART WD40_4 144 183 IPR001680 GO:0005515
Ssu4g0859 269 SMART WD40_4 190 233 IPR001680 GO:0005515
Ssu4g0859 269 SMART WD40_4 2 47 IPR001680 GO:0005515
Ssu4g0859 269 SMART WD40_4 99 138 IPR001680 GO:0005515
Ssu4g0859 269 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 94 IPR001680 GO:0005515
Ssu4g0859 269 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 201 236 - -
Ssu4g0859 269 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 236 IPR001680 GO:0005515
Ssu4g0859 269 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Ssu4g0859 269 PRINTS G protein beta WD-40 repeat signature 125 139 IPR020472 -
Ssu4g0859 269 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0859 65 244 Miscellaneous Gene Families AT5G08390 26.667 4.55e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0859 K24730 - gmx:100778826 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0859 4 13465922 13469130 Ssu4g0859 4 13465922 13469130 ECH