Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0854 ATGGCGATGAAGAAGTTGCTGAAAGTGAAACCATTGCCAAAGCCAAAACCCCCTTCTTCCGAGATCCCCAACCTCCCTCTCCCTTCCCCACCACCAGACACACCGTTGTCCCCCGCTCAGTACGCGCGCTTCCTGGACTTCCTGAAGGCCCACTGGGCCCCACCTTTGGGCCCGGACACCCTCCTCCACTTCCTGAAATCCAAGCTGCACCACCACCCCTCCTTCTCCCACCTCGACTTCCACCTCTTCACGTGGGCCTCCTCCGTCGACTCCTTCCGCCACACCCACTCCACGTTCTACTGGATGGCCCGCACCCTCGCCGCCACCCACCGCTTCCCCCAGCTCCGCGCCCTCCTCCACCTCCTCGCCGCCCACCCCTGCCCCTGCTCCCCCTCCATCTTCTCCTGCCCCCAGACCGAACCCATCTTCCACACTGCCATCCACGCCTTCTCCAAAGCCTCCAAGCTCGACGACGCCGTTTCCGCCTTCCACTCCATGCGCAAACTCATCGACGGCAAGCCAAACGTCGCCGTCTGCAACATCATTATCCACGCCTTCGTCAAACGCGGCAGCCACGATACGGCTCTCGCGTTTTACCGCCAGATGGTGGCCGCGTGTAGGGTTAAGCCCGATGTCTTCACGTTTAACATTTTGATTAGTGGTTATTGTCGGAATTCGCAGTTCGGGCTGGCGCTGGAGATGTTCAACGAGATGGGGAAAACAGGGTGTTACCCGAATGTGGTTACTTTTAATACCTTGATTAAGGGGATGTTTGGGGAGGGGAGGGTCGAGGAAGCGATTGGGATGGCTCGCGAGATGGTTCAATTGGGGTGTGGGCTTTCGAGTGTCACGTGCGAGATTTTGGTTCAGGGGCTCTGTAAGGAAGGGAGGGTTTTGCAGGCCGGTGAGTTGTTGCTGGAGTTTTCTGAGAAGGGGGTTTTGCCGGAAGGGTTTGATTATTTTGCGTTGGTGGAGGTTTTGTGTGGGGAGGGGAATGTTGTGAGAGCGTTGGAGCTTCTTTATGGGTTGTGGAATGGGGGGCGCGTTCCGAGTTTGGTTGCTTGTATTGTTATGGTTGATGGGTTGAGAGGGTTGGGGAGGACTGAGGAGGTGCAGAGACTGGTGGAAAGAATGCTTGAAGAGGGGATGGTGCTGGATGTTGTGACTTTCAATTGTGTTCTTAGGGATATTTGCGATGCGCGGACAACGGATGAGGCCAATAAATTGAGATTGCTTGCTTTGAGCAAGGGTCTGGAACCGGATGGCATGACATATAGGATTTTGGTTATGGGGTATATGGGAGACGgagggagagagaaaggagagttGCTGGTGAATGAAATGTTGGATAGGGGGTTTATACCTGATCTTGCTTCATATAATAAGTTGATGAGTGGGTTGTCGAATTGCCAACACTCTACATGCCGTCAAGTAAACAAATTTGATCGCTGA 1452 0.5379 MAMKKLLKVKPLPKPKPPSSEIPNLPLPSPPPDTPLSPAQYARFLDFLKAHWAPPLGPDTLLHFLKSKLHHHPSFSHLDFHLFTWASSVDSFRHTHSTFYWMARTLAATHRFPQLRALLHLLAAHPCPCSPSIFSCPQTEPIFHTAIHAFSKASKLDDAVSAFHSMRKLIDGKPNVAVCNIIIHAFVKRGSHDTALAFYRQMVAACRVKPDVFTFNILISGYCRNSQFGLALEMFNEMGKTGCYPNVVTFNTLIKGMFGEGRVEEAIGMAREMVQLGCGLSSVTCEILVQGLCKEGRVLQAGELLLEFSEKGVLPEGFDYFALVEVLCGEGNVVRALELLYGLWNGGRVPSLVACIVMVDGLRGLGRTEEVQRLVERMLEEGMVLDVVTFNCVLRDICDARTTDEANKLRLLALSKGLEPDGMTYRILVMGYMGDGGREKGELLVNEMLDRGFIPDLASYNKLMSGLSNCQHSTCRQVNKFDR 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0854 483 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 11 471 - -
Ssu4g0854 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Ssu4g0854 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Ssu4g0854 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Ssu4g0854 483 TIGRFAM PPR: pentatricopeptide repeat domain 283 315 IPR002885 -
Ssu4g0854 483 TIGRFAM PPR: pentatricopeptide repeat domain 178 212 IPR002885 -
Ssu4g0854 483 TIGRFAM PPR: pentatricopeptide repeat domain 143 169 IPR002885 -
Ssu4g0854 483 TIGRFAM PPR: pentatricopeptide repeat domain 213 247 IPR002885 -
Ssu4g0854 483 TIGRFAM PPR: pentatricopeptide repeat domain 248 280 IPR002885 -
Ssu4g0854 483 Pfam PPR repeat 283 313 IPR002885 -
Ssu4g0854 483 Pfam PPR repeat 357 382 IPR002885 -
Ssu4g0854 483 Pfam PPR repeat 178 203 IPR002885 -
Ssu4g0854 483 Pfam PPR repeat 143 168 IPR002885 -
Ssu4g0854 483 PANTHER ATPASE EXPRESSION PROTEIN 3 11 471 - -
Ssu4g0854 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Ssu4g0854 483 Gene3D Tetratricopeptide repeat domain 56 201 IPR011990 GO:0005515
Ssu4g0854 483 Gene3D Tetratricopeptide repeat domain 202 274 IPR011990 GO:0005515
Ssu4g0854 483 Gene3D Tetratricopeptide repeat domain 275 344 IPR011990 GO:0005515
Ssu4g0854 483 SUPERFAMILY HCP-like 145 278 - -
Ssu4g0854 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Ssu4g0854 483 Pfam PPR repeat family 210 257 IPR002885 -
Ssu4g0854 483 Gene3D Tetratricopeptide repeat domain 345 481 IPR011990 GO:0005515
Ssu4g0854 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 205 IPR002885 -
Ssu4g0854 483 MobiDBLite consensus disorder prediction 1 32 - -
Ssu4g0854 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Ssu4g0854 483 MobiDBLite consensus disorder prediction 12 32 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0854 175 472 Glycosyltransferase AT1G05670 26.190 1.18e-28 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0854 - - gmx:100796880 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0854 4 13439427 13440878 Ssu4g0854 4 13439427 13440878 ECH