Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0853 ATGTTTCCTCTTAGCAACCCGTCTCTTTGTCTGAAATCGGGTATCATGGTCCCGATTCCAGGAAAACCTACCAAGCACTCTTCGACTCTCTCTGTCACCAACTCCGCGTCTTCCGGCGAGAGAATCAGCACCCGCCGAAGAACCATGTCACCCTTCGAAGCCCGAATCTCAGTCATCTTCGCCCTTGCTTCTCAAGCCAACTCTCTCTCCCAGCGACTTCTGGCGGACGTGGCTGCCGAGACGGCAAAATACGTGTTTCCGAAGAGATTTGAAAGCCGCACTCTCGAGGAGGCGTTGATGAGTGTTCCGGACCTTGAGACTGTAGAGTTCAAAGTTCTGAGTAGAAGGGACCAGTATGAGATTAGGGAAGTTGAGCCTTACTTTGTGGCAGAGACAACAATGCCTGGGAAGACTGGGTTTGATTTCAATGGTGCTTCTCGGTCCTTTAATGTCCTAGCTGAGTACCTTTTTGGTAAgAATACAATGAAGGAGAAAATGGAGATGACTACACCTGTTATCACAAGTAAGAATCAGTCTGATGGGATTAAAATGGATATGACAACTCCTGTGTTAACAGCAAAgGTGGAAGACCAAGATAAGTGGAAAATGTCCTTTGTCATGCCATCAAAGTATGGTGCTAACTTGCCACTGCCTAAAGATTCCTCTGTGAGGATTAAAGAGGTGCCCAGAAAAATAGTTGCCGTAGTTTCCTTTTCAGGTTTTGTGAATGATGAAGAAGTTAAGCAGCGTGAACTAAAACTGAGAGAAGCTTTAAAAAGTGACAgtcagtttaaaattaaagagggaACTTCAGTCGAGGTTGCACAGGTTAAATTCTTAATGCATCTTGGGGTTAAAGGTCCCCGGGGTTTCCCCGTTgatccttttcttcttcaaatgtcaattactctttttattttcttgcagTATAATCCACCATTTACTCTTCCATTTCAACGCCGTAATGAGATTGCATTGGAGGTGCAATGGAAAACTAAGTAG 1002 0.4222 MFPLSNPSLCLKSGIMVPIPGKPTKHSSTLSVTNSASSGERISTRRRTMSPFEARISVIFALASQANSLSQRLLADVAAETAKYVFPKRFESRTLEEALMSVPDLETVEFKVLSRRDQYEIREVEPYFVAETTMPGKTGFDFNGASRSFNVLAEYLFGKNTMKEKMEMTTPVITSKNQSDGIKMDMTTPVLTAKVEDQDKWKMSFVMPSKYGANLPLPKDSSVRIKEVPRKIVAVVSFSGFVNDEEVKQRELKLREALKSDSQFKIKEGTSVEVAQVKFLMHLGVKGPRGFPVDPFLLQMSITLFIFLQYNPPFTLPFQRRNEIALEVQWKTK 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0853 333 Gene3D Regulatory factor, effector binding domain 104 177 IPR011256 -
Ssu4g0853 333 Pfam SOUL heme-binding protein 173 263 IPR006917 -
Ssu4g0853 333 PANTHER HEME-BINDING PROTEIN-RELATED 308 332 IPR006917 -
Ssu4g0853 333 PANTHER HEME-BINDING PROTEIN-RELATED 33 276 IPR006917 -
Ssu4g0853 333 SUPERFAMILY Probable bacterial effector-binding domain 176 328 IPR011256 -
Ssu4g0853 333 MobiDBLite consensus disorder prediction 24 45 - -
Ssu4g0853 333 PANTHER OS02G0533200 PROTEIN 308 332 - -
Ssu4g0853 333 PANTHER OS02G0533200 PROTEIN 33 276 - -
Ssu4g0853 333 Gene3D Regulatory factor, effector binding domain 178 327 IPR011256 -
Ssu4g0853 333 MobiDBLite consensus disorder prediction 22 46 - -
Ssu4g0853 333 SUPERFAMILY Probable bacterial effector-binding domain 100 176 IPR011256 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0853 Ssu-Chr4 13432542 13435647 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0853 - - ccaj:109796809 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0853 4 13432542 13435647 Ssu4g0853 4 13432542 13435647 ECH