Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0848 ATGTCggggaagagaaagaggaagttAAAATTgTTAAGCGACACAATCACAGATAGTAGAAGAGCAATTGCTGAggtgaaaagtgaaaatttggAGCTGCAATCCTGGGCCGATCTCCCTGCTGAACTCTTAGAATTGATCTTGTCCCGATTGATCCTAGCGGACAACATACGTGCTTCTGCTGTTTGCAAGAGATGGCATTCTGTTGCCAGTGATGTACGTGTAGTAAACCAATCACCATTGCTTATGTATTTTCCAAAATTCGGCGACTGTTATGAATTCTATGACCCTGTGCAGCGTAAGACACACTCCCTTGAGTTGCCAGAGTTGAATGGATCTAGAGTTTGTTATACAAAAGATGGTTGGTTATTGCTATACCGGCCCAGAACTCACCGAGTATTCTTCTTTAATCCCTTTACTCGGGAGCTGATCAAACTGCCAAGATTTGAGATGACATACCAGATTGTTGCCTTCTCTTGTGCTCCAACATCACCTGGCTGTGTTCTGTTTACTGTTAAGCATGTTAGTCCTACTGTTGTAGCTATTAGCACATGTTATCCTGGAGCAACAGAATGGACCACTGTTAATTACCAAAATCGCTTGCCCTTCGTCAGTAGCATTTGGAATAAGCTTGTGTTTTGTAATGGGTTATTTTATTGTCTGAGTCTCACAGGTTGGCTTGGGGTGTTTGACCCAGTTGAATGTACTTGGAGTGTTCTGGCAGTACCTCCACCCAAATGCCCAGAGAACTTTTTTGCCAAAAACTGGTGGAAGGGGAAATTTATGACAGAGCATGAAGGAgatatattagtaatttataCATGCTGTAGTGAAAACcccattatttttaagttagatcGGACATTAATGAAATGGGAAGAGATGACAACACTAGATGGAGTAACTCTTTTTGCTAGTTTTTTGTCATCTCATTCAAGGACTGACCTCATCGGAATAATGAGGAACAGTGTCTACTTCTCTAAAGTTCGCTTCTATGGAAAGCGTTGCATATCATTCTCTCTTGATGACTATAGATACTATCCCCGTAAACAGTGTCATGACTGGGGAGAACAAGACCCTTTTGAGAACATCTGGGTTGAGCCACCAAAGGGCTTTTCTGCTAGCATGTGA 1131 0.3952 MSGKRKRKLKLLSDTITDSRRAIAEVKSENLELQSWADLPAELLELILSRLILADNIRASAVCKRWHSVASDVRVVNQSPLLMYFPKFGDCYEFYDPVQRKTHSLELPELNGSRVCYTKDGWLLLYRPRTHRVFFFNPFTRELIKLPRFEMTYQIVAFSCAPTSPGCVLFTVKHVSPTVVAISTCYPGATEWTTVNYQNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVFDPVECTWSVLAVPPPKCPENFFAKNWWKGKFMTEHEGDILVIYTCCSENPIIFKLDRTLMKWEEMTTLDGVTLFASFLSSHSRTDLIGIMRNSVYFSKVRFYGKRCISFSLDDYRYYPRKQCHDWGEQDPFENIWVEPPKGFSASM 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0848 376 Gene3D - 35 75 - -
Ssu4g0848 376 PANTHER OS09G0392200 PROTEIN 6 372 IPR044619 -
Ssu4g0848 376 Pfam F-box-like 36 72 IPR001810 GO:0005515
Ssu4g0848 376 ProSiteProfiles F-box domain profile. 33 79 IPR001810 GO:0005515
Ssu4g0848 376 SUPERFAMILY F-box domain 31 126 IPR036047 GO:0005515
Ssu4g0848 376 PANTHER OS09G0392200 PROTEIN 6 372 - -
Ssu4g0848 376 SMART fbox_2 39 79 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0848 Ssu-Chr4 13338383 13340508 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0848 - - gmx:100796538 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0848 4 13338383 13340508 Ssu4g0848 4 13338383 13340508 ECH