Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0843 ATGACGGAAGTGCTTCAGTTGCCTTCATCCTCAAGCTGTTCGAGTCGGCCATGTGGTGGTCTCTCACCCAATGATGGGTCGCACCCAAGTCCCCTTATTAACGCTCCCACTGTGGAAGAAGAAGGGGTGGCAGAGAGGGTTgaacaagaagaagagaaagaaagggaaagagAGAGGGATCAGCTTTCCATTTTGACCCTTCTGATTGATACGTTTAGGAAATCTTTGATTGGGTGCAGCACtacaacttcttcttcttcctccatgGAGATTGGGTGGCCTTCCAATGTGAGGCACGTGGCGCATGTCACCTTCGATCGCTTCCATGGCTTTCTTGGTTTGCCTGTTGAGTTTGAACCCGAAGTTCCCAGGAGACCTCCCAGCGCCAGTGCAAATGTTTTTGGAGTTTCAACAGAATCTATGCAGCTTTCTTTTGATGCCAGAGGAAATAGTGTACCTACAATACTGCTGTTAATGCAAAGACATTTGTATGCACAAGGAGGCCTGCAGGCTGAAGGAATCTTCAGAATTAACGCTGAAAATAGTCAAGAGGAATTTGTGAGGGAACAATTAAACAGAGGAGTAGTACCAGATGGCATTGATGTCCACTGCTTGGCGGGTCTTATAAAGGCTTGGTTCAGAGAACTACCAACTGGGGTATTGGACCCTCTTTCACCAGAGCAGGTGATGCAATCCCAGTCAGAAGAAGAATGTGCTCAGCTTGTGAGGCTTCTTCCTCAAACAGAAGCTGCTTTGCTAGATTGGGCAATAAACTTAATGGCGGATGTTGCTCAACTGGAAAATCTGAACAAGATGAATGCACGTAATATTGCAATGGTTTTTGCGCCGAACATGACTCAGATGGCAGATCCTTTGACTGCTTTGATGTATGCAGTACAAGTCATGAATTTTCTCAAGACTCTTGTCGTGAAGACACTGAGAAAACGAGAGGAGTCTATTGTAAAATCAAATCCTGTTCCAAACCTTAATTCTTTTGACGATGATGGGCACCATAGCAATTCAGAAATGCTTCACAAGGATGGCAGTGAAAATGGAAATGATTGTAGTGACAATGATGAGGATACAGTATTTGTCACTGCAGAGCCCTCTCAACAAAGCCCTAGTCATCGAACTGAAGATGGCTGTGCAACTGAAACCGAAACTGAATCCAAAAGTTTGCCAACATCTactgaaaattttatttctagtgGTTGTGGAAATAAGTTGCTGGTTGACCGTTGTCCTTGCAGTCTCTTATCTCAAATTTGCTCTTTGGCAATTGGACTTCAAGATTGTGGCCTCGCTGCCGAGCAGACAAAGGGGGATCAAGCAAAAATTTGCAGGAGCAAAAGCCTTCAGTTGAGTACTTATGACACAGACAAGAGTTCCAGAAAGGTGATTGAGCTTCCGGTAGTAGGAGTTGCAGAGAAGAACCGGGGAACCGCAATTATTGGGCGTATAAATTCGAGAACAGAGTTGGCTGAAGCTTGGCGTTGA 1497 0.4309 MTEVLQLPSSSSCSSRPCGGLSPNDGSHPSPLINAPTVEEEGVAERVEQEEEKERERERDQLSILTLLIDTFRKSLIGCSTTTSSSSSMEIGWPSNVRHVAHVTFDRFHGFLGLPVEFEPEVPRRPPSASANVFGVSTESMQLSFDARGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENSQEEFVREQLNRGVVPDGIDVHCLAGLIKAWFRELPTGVLDPLSPEQVMQSQSEEECAQLVRLLPQTEAALLDWAINLMADVAQLENLNKMNARNIAMVFAPNMTQMADPLTALMYAVQVMNFLKTLVVKTLRKREESIVKSNPVPNLNSFDDDGHHSNSEMLHKDGSENGNDCSDNDEDTVFVTAEPSQQSPSHRTEDGCATETETESKSLPTSTENFISSGCGNKLLVDRCPCSLLSQICSLAIGLQDCGLAAEQTKGDQAKICRSKSLQLSTYDTDKSSRKVIELPVVGVAEKNRGTAIIGRINSRTELAEAWR 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0843 498 Gene3D CRIB domain 85 119 IPR036936 -
Ssu4g0843 498 SUPERFAMILY GTPase activation domain, GAP 131 309 IPR008936 GO:0007165
Ssu4g0843 498 Pfam P21-Rho-binding domain 90 116 IPR000095 -
Ssu4g0843 498 PANTHER MKIAA1688 PROTEIN 1 498 IPR044785 GO:0005096
Ssu4g0843 498 MobiDBLite consensus disorder prediction 323 397 - -
Ssu4g0843 498 Pfam RhoGAP domain 153 287 IPR000198 GO:0007165
Ssu4g0843 498 SMART PBD_5 91 125 IPR000095 -
Ssu4g0843 498 MobiDBLite consensus disorder prediction 358 379 - -
Ssu4g0843 498 MobiDBLite consensus disorder prediction 1 31 - -
Ssu4g0843 498 MobiDBLite consensus disorder prediction 1 58 - -
Ssu4g0843 498 ProSiteProfiles CRIB domain profile. 91 104 IPR000095 -
Ssu4g0843 498 CDD RhoGAP 153 308 - -
Ssu4g0843 498 CDD CRIB 89 129 - -
Ssu4g0843 498 Gene3D Rho GTPase activation protein 120 325 IPR008936 GO:0007165
Ssu4g0843 498 PANTHER RHO GTPASE-ACTIVATING PROTEIN 1 1 498 - -
Ssu4g0843 498 SMART RhoGAP_3 150 313 IPR000198 GO:0007165
Ssu4g0843 498 ProSiteProfiles Rho GTPase-activating proteins domain profile. 136 321 IPR000198 GO:0007165
Ssu4g0843 498 MobiDBLite consensus disorder prediction 335 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0843 Ssu-Chr4 13303604 13307153 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0843 - - gmx:100783118 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0843 4 13303604 13307153 Ssu4g0843 4 13303604 13307153 ECH